Tableau information
Concept source: d1yqwr_ amino acid (a.a.) range (SER466)(ASP541)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: EEEHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER466) (ALA472) E1
(GLY477) (GLY487) E2
(ASP491) (VAL497) E3
(VAL497) (ASN502) H4
(SER513) (LEU519) H5
(VAL531) (ASP541) H6
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 164.9° E2
E3 -15.8° 178.7° E3
H4 -69.8° 123.3° -55.6° H4
H5 -31.7° -157.9° 20.8° 39.1° H5
H6 123.1° -53.5° 127.7° 138.8° 146.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1yq9h1 : (SER453) (ASP528) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |Nickel-iron hydrogenase, large subunit |Desulfovibrio gigas [TaxId: 879]
d3h3xr_ : (SER466) (ASP541) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |automated matches |Desulfovibrio fructosovorans [TaxId: 878]
d4kn9l_ : (ALA415) (ARG487) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |automated matches |Desulfomicrobium baculatum [TaxId: 525897]
d1h2al_ : (GLU470) (ASP544) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |Nickel-iron hydrogenase, large subunit |Desulfovibrio vulgaris [TaxId: 881]
d3uqyl_ : (CYS499) (ASP574) [view usage] : e.18.1.0 |HydB/Nqo4-like |HydB/Nqo4-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1cc1l_ : (ALA415) (ARG487) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |Nickel-iron hydrogenase, large subunit |Desulfomicrobium baculatum [TaxId: 899]
d3h3xq_ : (SER466) (ASP541) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |automated matches |Desulfovibrio fructosovorans [TaxId: 878]
d1ubhl_ : (GLU470) (ASP544) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |Nickel-iron hydrogenase, large subunit |Desulfovibrio vulgaris [TaxId: 881]
d3myrd_ : (ALA1477) (ASP1553) [view usage] : e.18.1.0 |HydB/Nqo4-like |HydB/Nqo4-like |automated matches |automated matches |Allochromatium vinosum [TaxId: 1049]
d1frvb_ : (GLN454) (ASP528) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |Nickel-iron hydrogenase, large subunit |Desulfovibrio gigas [TaxId: 879]
d1yrqh_ : (SER466) (ASP541) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |automated matches |Desulfovibrio fructosovorans [TaxId: 878]
d2frvb_ : (SER453) (ASP528) [view usage] : e.18.1.1 |HydB/Nqo4-like |HydB/Nqo4-like |Nickel-iron hydrogenase, large subunit |Nickel-iron hydrogenase, large subunit |Desulfovibrio gigas [TaxId: 879]
d3myrb_ : (GLN1478) (ASP1553) [view usage] : e.18.1.0 |HydB/Nqo4-like |HydB/Nqo4-like |automated matches |automated matches |Allochromatium vinosum [TaxId: 1049]
d3ayxa_ : (GLU511) (ASP588) [view usage] : e.18.1.0 |HydB/Nqo4-like |HydB/Nqo4-like |automated matches |automated matches |Hydrogenovibrio marinus [TaxId: 28885]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.18