Protein Concepts Dictionary

Tableau information

Concept source:  d1zoia_  amino acid (a.a.) range (SER2)(ASP56)

nSSEs in this Concept: 6

String of secondary struct.elems. (SSEs) defining this concept: EEEHHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (SER2)    (LYS7) E1
	    (GLY9)   (GLY18) E2
	   (PRO23)   (HIS29) E3
	   (SER34)   (TRP38) H4
	   (TRP38)   (GLY49) H5
	   (ARG51)   (ASP56) E6

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                        
E2      142.2°   E2                                 
E3      -73.4°  131.7°   E3                          
H4      129.9°  -13.3°  131.9°   H4                   
H5      108.6°  -45.7°  177.3°   45.4°   H5            
E6      -60.7°  150.1°  -19.1°  150.9° -163.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.5°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1edba_ :    (SER21)   (PHE82)   [view usage] : c.69.1.8 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloalkane dehalogenase |Haloalkane dehalogenase |Xanthobacter autotrophicus [TaxId: 280]
 d3wu3e_ :   (VAL598)  (VAL668)   [view usage] : d.14.1.10 |Ribosomal protein S5 domain 2-like |Ribosomal protein S5 domain 2-like |ATP-dependent protease Lon (La), catalytic domain |ATP-dependent protease Lon (La), catalytic domain |Escherichia coli [TaxId: 562]
 d4dgqa_ :     (GLY2)   (ASP56)   [view usage] : c.69.1.12 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloperoxidase |automated matches |Burkholderia cenocepacia [TaxId: 216591]
 d1a88a_ :     (GLY1)   (ASP55)   [view usage] : c.69.1.12 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloperoxidase |Chloroperoxidase L |Streptomyces lividans [TaxId: 1916]
 d2jbwc_ :   (PRO112)  (ASP172)   [view usage] : c.69.1.41 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |2,6-dihydropseudooxynicotine hydrolase-like |2,6-dihydropseudooxynicotine hydrolase |Arthrobacter nicotinovorans [TaxId: 29320]
 d4inzb_ :     (GLN4)   (ASP54)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Bacillus megaterium [TaxId: 1404]
 d4inza_ :     (SER2)   (ASP54)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Bacillus megaterium [TaxId: 1404]
 d4o08b_ :     (GLN4)   (ASP54)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Bacillus megaterium [TaxId: 1404]
 d2qvba_ :    (GLN11)   (LEU64)   [view usage] : c.69.1.8 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloalkane dehalogenase |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d4kaca_ :    (ASP22)   (ASP76)   [view usage] : c.69.1.8 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloalkane dehalogenase |automated matches |Rhodococcus sp. [TaxId: 1831]
 d1q0ra_ :     (ARG4)   (ASP58)   [view usage] : c.69.1.28 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Aclacinomycin methylesterase RdmC |Aclacinomycin methylesterase RdmC |Streptomyces purpurascens [TaxId: 1924]
 d4io0b_ :     (GLN4)   (LEU55)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Bacillus megaterium [TaxId: 1404]
 d1zoia_ :     (SER2)   (ASP56)   [view usage] : c.69.1.12 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Haloperoxidase |automated matches |Pseudomonas putida [TaxId: 303]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.69,    d.14