Protein Concepts Dictionary

Tableau information

Concept source:  d1m6da_  amino acid (a.a.) range (HIS159)(ASP212)

nSSEs in this Concept: 6

String of secondary struct.elems. (SSEs) defining this concept: EEEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (HIS159)  (VAL164) E1
	  (VAL164)  (GLN167) E2
	  (PRO169)  (LYS174) E3
	  (GLY185)  (HIS190) E4
	  (GLY201)  (ALA206) H5
	  (ALA206)  (ASP212) E6

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                        
E2       71.8°   E2                                 
E3      108.8°  152.4°   E3                          
E4      -82.9°  -46.4°  159.6°   E4                   
H5      -78.9° -142.6°   59.9° -108.1°   H5            
E6      -58.1° -129.5°   61.4° -116.0°  -25.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.2°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3hd3a_ :   (HIS162)  (GLY215)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Cruzain |Trypanosoma cruzi [TaxId: 5693]
 d4lega_ :   (HIS162)  (MET215)   [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1a6ra_ :   (HIS369)  (ASP421)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Bleomycin hydrolase |Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]
 d2p7ua_ :   (HIS162)  (GLY215)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |automated matches |Trypanosoma brucei [TaxId: 31286]
 d1m6da_ :   (HIS159)  (ASP212)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Cathepsin F |Human (Homo sapiens) [TaxId: 9606]
 d7pcka_ :   (HIS162)  (MET215)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin K |Human (Homo sapiens) [TaxId: 9606]
 d1deua_ :   (HIS180)  (ASP239)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin X |Human (Homo sapiens) [TaxId: 9606]
 d3qj3b_ :   (HIS267)  (LEU320)   [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Yellow mealworm (Tenebrio molitor) [TaxId: 7067]
 d3qj3a_ :   (HIS267)  (LEU320)   [view usage] : d.3.1.0 |Cysteine proteinases |Cysteine proteinases |automated matches |automated matches |Yellow mealworm (Tenebrio molitor) [TaxId: 7067]
 d1ewla_ :   (HIS159)  (GLY212)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Cruzain |Trypanosoma cruzi [TaxId: 5693]
 d1aima_ :   (HIS159)  (GLY212)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |Cruzain |Trypanosoma cruzi [TaxId: 5693]
 d3kwby_ :  (HIS2162) (MET2215)   [view usage] : d.3.1.1 |Cysteine proteinases |Cysteine proteinases |Papain-like |(Pro)cathepsin K |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   d.3