Protein Concepts Dictionary

Tableau information

Concept source:  d1o7fa3  amino acid (a.a.) range (THR374)(LEU420)

nSSEs in this Concept: 6

String of secondary struct.elems. (SSEs) defining this concept: EEEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (THR374)  (ILE379) E1
	  (GLY382)  (ILE388) E2
	  (CYS395)  (GLU399) E3
	  (GLY400)  (GLY404) E4
	  (GLY404)  (ASN410) H5
	  (ALA416)  (LEU420) E6

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                        
E2     -133.3°   E2                                 
E3      -69.3°  155.7°   E3                          
E4      160.8°   33.3° -127.3°   E4                   
H5     -154.2°   66.7°   89.1°   44.9°   H5            
E6       40.7°  152.5°  -48.6° -139.6° -130.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3i54d1 :    (ASP45)   (THR97)   [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d3d0sa1 :    (ASP45)   (THR95)   [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d4byya1 :    (ASP48)   (CYS98)   [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Corynebacterium glutamicum [TaxId: 1718]
 d3clpc_ :   (ARG271)  (ALA313)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Rhizobium loti [TaxId: 381]
 d1u12a_ :   (ARG271)  (ALA313)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Putative ion channel CnbD |Mesorhizobium loti [TaxId: 381]
 d3co2c_ :   (ARG271)  (ALA313)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Mesorhizobium loti [TaxId: 381]
 d1u12b_ :   (ARG271)  (ALA313)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Putative ion channel CnbD |Mesorhizobium loti [TaxId: 381]
 d3iwza1 :    (THR54)  (THR106)   [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Xanthomonas campestris [TaxId: 340]
 d1o7fa2 :    (ASN79)  (GLU131)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Regulatory domain of Epac2, domains 1 and 3 |Mouse (Mus musculus) [TaxId: 10090]
 d3co2a_ :   (ARG271)  (ALA313)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Mesorhizobium loti [TaxId: 381]
 d3of1a2 :   (GLU337)  (ALA383)   [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d3of1a1 :   (TYR220)  (SER266)   [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d3clpa_ :   (ARG271)  (ALA313)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Rhizobium loti [TaxId: 381]
 d3rpqa1 :    (THR38)   (ALA88)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Catabolite gene activator protein, N-terminal domain |Escherichia coli [TaxId: 562]
 d1cgpa2 :    (THR38)   (ALA88)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Catabolite gene activator protein, N-terminal domain |Escherichia coli [TaxId: 562]
 d4n9ha1 :    (THR38)   (ALA88)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Catabolite gene activator protein, N-terminal domain |Escherichia coli [TaxId: 562]
 d1ne4a2 :   (ASP288)  (ALA339)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Regulatory subunit of Protein kinase A |Cow (Bos taurus) [TaxId: 9913]
 d3co2d_ :   (MET272)  (ALA313)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Mesorhizobium loti [TaxId: 381]
 d3mzha1 :    (ASP45)   (THR95)   [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d3co2b_ :   (MET272)  (ALA313)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Mesorhizobium loti [TaxId: 381]
 d1o7fa3 :   (THR374)  (LEU420)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Regulatory domain of Epac2, domains 1 and 3 |Mouse (Mus musculus) [TaxId: 10090]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.82