Tableau information
Concept source: d1yiva1 amino acid (a.a.) range (GLY67)(VAL131)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: EEEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY67) (ASP71) E1
(LYS81) (LEU86) E2
(ASN92) (ASN98) E3
(GLY99) (LEU108) E4
(MET113) (MET119) E5
(SER121) (VAL131) E6
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 152.2° E2
E3 -36.7° 169.9° E3
E4 125.9° -27.1° 162.6° E4
E5 -62.0° 142.0° -28.0° 165.4° E5
E6 101.5° -57.2° 132.6° -34.2° 160.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1yiva1 : (GLY67) (VAL131) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |P2 myelin protein |Horse (Equus caballus) [TaxId: 9796]
d4i3bf_ : (GLY72) (ARG135) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Eel (Anguilla japonica) [TaxId: 7937]
d1ug9a4 : (TRP100) (VAL172) [view usage] : b.30.5.5 |Supersandwich |Galactose mutarotase-like |Bacterial glucoamylase N-terminal domain-like |Glucodextranase, domain N |Arthrobacter globiformis [TaxId: 1665]
d3sk3a1 : (SER3) (ALA56) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Salmonella enterica [TaxId: 90371]
d2arca_ : (GLY12) (PRO68) [view usage] : b.82.4.1 |Double-stranded beta-helix |Regulatory protein AraC |Regulatory protein AraC |Regulatory protein AraC |Escherichia coli [TaxId: 562]
d2eaka_ : (PHE17) (PRO84) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4lmfa3 : (GLY162) (GLY233) [view usage] : b.23.1.1 |CUB-like |Spermadhesin, CUB domain |Spermadhesin, CUB domain |Complement C1S component |Human (Homo sapiens) [TaxId: 9606]
d1orma_ : (THR4) (TYR109) [view usage] : f.4.1.1 |Transmembrane beta-barrels |OMPA-like |Outer membrane protein |Outer membrane protein X (OMPX) |Escherichia coli [TaxId: 562]
d3b2ha_ : (CYS69) (GLY128) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver fatty acid binding protein |Human (Homo sapiens) [TaxId: 9606]
d2o3ea_ : (GLY379) (HIS466) [view usage] : d.92.1.5 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Neurolysin-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2d6kb_ : (PHE17) (MET88) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d2h1ta1 : (PRO16) (ASP87) [view usage] : b.178.1.1 |Spiral beta-roll |PA1994-like |PA1994-like |Hypothetical protein PA1994 |Pseudomonas aeruginosa [TaxId: 287]
d2l67a_ : (CYS69) (SER124) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver fatty acid binding protein |Human (Homo sapiens) [TaxId: 9606]
d2d6ma_ : (PHE17) (MET88) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1yqfa1 : (GLY45) (ASP118) [view usage] : d.25.1.1 |Mitochondrial glycoprotein MAM33-like |Mitochondrial glycoprotein MAM33-like |Mitochondrial glycoprotein MAM33-like |Hypothetical protein Lmaj011689 |Leishmania major [TaxId: 5664]
d2pcsa1 : (LYS34) (GLY115) [view usage] : d.129.3.10 |TBP-like |Bet v1-like |CoxG-like |Hypothetical protein GKP20 |Geobacillus kaustophilus [TaxId: 1462]
d2h1tb_ : (PRO16) (ASP87) [view usage] : b.178.1.1 |Spiral beta-roll |PA1994-like |PA1994-like |Hypothetical protein PA1994 |Pseudomonas aeruginosa [TaxId: 287]
d1fw2a_ : (PRO175) (GLY262) [view usage] : f.4.2.1 |Transmembrane beta-barrels |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Escherichia coli [TaxId: 562]
d4azma_ : (PHE73) (GLU132) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xdfa1 : (SER39) (LYS122) [view usage] : d.129.3.1 |TBP-like |Bet v1-like |Pathogenesis-related protein 10 (PR10)-like |Plant pathogenesis-related protein PR10 |Yellow lupine (Lupinus luteus) [TaxId: 3873]
d2ns9b_ : (LYS45) (GLY124) [view usage] : d.129.3.10 |TBP-like |Bet v1-like |CoxG-like |Hypothetical protein APE2225 |Aeropyrum pernix [TaxId: 56636]
d2py1a_ : (GLU69) (LYS127) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver fatty acid binding protein |Human (Homo sapiens) [TaxId: 9606]
d2a6vb_ : (GLN31) (ASP134) [view usage] : b.29.1.13 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Lectin leg-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4i3ca_ : (PHE75) (ARG136) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Eel (Anguilla japonica) [TaxId: 7937]
d3b2ka_ : (CYS69) (SER124) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Liver fatty acid binding protein |Human (Homo sapiens) [TaxId: 9606]
d3zo0b_ : (ALA56) (GLN122) [view usage] : b.29.1.22 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |SPRY domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3rswa_ : (GLY68) (ALA133) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1dc9a_ : (PHE68) (LYS129) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Intestinal fatty acid binding protein |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1bwya_ : (GLY67) (THR125) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Muscle fatty acid binding protein (m-fabp) |Cow (Bos taurus) [TaxId: 9913]
d2qeda1 : (GLY92) (PHE138) [view usage] : d.157.1.2 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Glyoxalase II (hydroxyacylglutathione hydrolase) |Glyoxalase II (hydroxyacylglutathione hydrolase) |Salmonella typhimurium [TaxId: 90371]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, b.29, b.30, d.157, d.92, d.129, f.4, c.55, b.60, b.23, b.178, d.25