Tableau information
Concept source: d3zzsa_ amino acid (a.a.) range (ASP8)(THR65)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: EEEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP8) (ALA14) E1
(VAL19) (THR25) E2
(HIS33) (ASP39) E3
(GLU42) (PHE48) E4
(SER53) (GLY59) E5
(ALA61) (THR65) E6
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -152.4° E2
E3 -42.6° 164.5° E3
E4 159.6° 14.3° -154.7° E4
E5 13.3° 160.4° -34.9° -159.5° E5
E6 163.0° -44.6° 120.5° -35.9° -151.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1yuda1 : (ALA59) (SER124) [view usage] : b.82.1.16 |Double-stranded beta-helix |RmlC-like cupins |YML079-like |Hypothetical protein SO0799 |Shewanella oneidensis [TaxId: 70863]
d2vmha_ : (ASP971) (ASP1046) [view usage] : b.18.1.33 |Galactose-binding domain-like |Galactose-binding domain-like |NPCBM-like |automated matches |Clostridium perfringens [TaxId: 1502]
d4axob_ : (ASP99) (PRO150) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d3bu7b_ : (SER124) (ASP178) [view usage] : b.82.1.23 |Double-stranded beta-helix |RmlC-like cupins |Gentisate 1,2-dioxygenase-like |Gentisate 1,2-dioxygenase |Silicibacter pomeroyi [TaxId: 89184]
d4b27a_ : (ASP8) (ALA66) [view usage] : b.82.5.1 |Double-stranded beta-helix |TRAP-like |Trp RNA-binding attenuation protein (TRAP) |automated matches |Bacillus subtilis [TaxId: 1423]
d2exsa_ : (ASP8) (MSE66) [view usage] : b.82.5.1 |Double-stranded beta-helix |TRAP-like |Trp RNA-binding attenuation protein (TRAP) |Trp RNA-binding attenuation protein (TRAP) |Bacillus stearothermophilus [TaxId: 1422]
d2ozja_ : (GLY57) (ASP110) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Desulfitobacterium hafniense [TaxId: 272564]
d1nzca_ : (ASP81) (ASP144) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-dehydrorhamnose 3,5-epimerase RmlC |Streptococcus suis [TaxId: 1307]
d1xrua1 : (ARG76) (PRO132) [view usage] : b.82.1.13 |Double-stranded beta-helix |RmlC-like cupins |KduI-like |5-keto-4-deoxyuronate isomerase KduI |Escherichia coli [TaxId: 562]
d3acla_ : (PHE61) (ASN119) [view usage] : b.82.1.12 |Double-stranded beta-helix |RmlC-like cupins |Pirin-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3zzqa_ : (ASP8) (ALA66) [view usage] : b.82.5.1 |Double-stranded beta-helix |TRAP-like |Trp RNA-binding attenuation protein (TRAP) |automated matches |Bacillus subtilis [TaxId: 1423]
d4iw3a_ : (MET135) (ARG201) [view usage] : b.82.2.0 |Double-stranded beta-helix |Clavaminate synthase-like |automated matches |automated matches |Pseudomonas putida [TaxId: 160488]
d1xrub_ : (ARG76) (PRO132) [view usage] : b.82.1.13 |Double-stranded beta-helix |RmlC-like cupins |KduI-like |5-keto-4-deoxyuronate isomerase KduI |Escherichia coli [TaxId: 562]
d1ofnb_ : (GLY70) (MET134) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD |Amycolatopsis orientalis [TaxId: 31958]
d3loia_ : (ASP74) (PRO138) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Branchiostoma belcheri [TaxId: 155462]
d1yhfa1 : (ASP58) (PRO110) [view usage] : b.82.1.9 |Double-stranded beta-helix |RmlC-like cupins |TM1287-like |Hypothetical protein SPy1581 |Streptococcus pyogenes [TaxId: 1314]
d2zczb_ : (SER7) (ARG66) [view usage] : b.82.5.1 |Double-stranded beta-helix |TRAP-like |Trp RNA-binding attenuation protein (TRAP) |Trp RNA-binding attenuation protein (TRAP) |Bacillus stearothermophilus [TaxId: 1422]
d1zvfa1 : (THR53) (GLN112) [view usage] : b.82.1.20 |Double-stranded beta-helix |RmlC-like cupins |3-hydroxyanthranilic acid dioxygenase-like |3-hydroxyanthranilate-3,4-dioxygenase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1sfna_ : (GLN1069) (PRO1120) [view usage] : b.82.1.11 |Double-stranded beta-helix |RmlC-like cupins |YlbA-like |Hypothetical protein DR1152 |Deinococcus radiodurans [TaxId: 1299]
d3zzsa_ : (ASP8) (THR65) [view usage] : b.82.5.1 |Double-stranded beta-helix |TRAP-like |Trp RNA-binding attenuation protein (TRAP) |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
d3zzla_ : (ASN8) (THR65) [view usage] : b.82.5.1 |Double-stranded beta-helix |TRAP-like |Trp RNA-binding attenuation protein (TRAP) |automated matches |Bacillus halodurans [TaxId: 86665]
d1tq5a1 : (ARG181) (PRO230) [view usage] : b.82.1.12 |Double-stranded beta-helix |RmlC-like cupins |Pirin-like |Hypothetical protein YhhW |Escherichia coli [TaxId: 562]
d2paka1 : (GLU55) (LEU109) [view usage] : b.82.1.1 |Double-stranded beta-helix |RmlC-like cupins |dTDP-sugar isomerase |dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA |Aneurinibacillus thermoaerophilus [TaxId: 143495]
d2exta_ : (ASP8) (ARG66) [view usage] : b.82.5.1 |Double-stranded beta-helix |TRAP-like |Trp RNA-binding attenuation protein (TRAP) |Trp RNA-binding attenuation protein (TRAP) |Bacillus stearothermophilus [TaxId: 1422]
d3scha2 : (GLY140) (PHE198) [view usage] : b.82.1.10 |Double-stranded beta-helix |RmlC-like cupins |TM1459-like |Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain |Streptomyces wedmorensis [TaxId: 43759]
d3dl3b_ : (ASP37) (ASP99) [view usage] : b.82.2.13 |Double-stranded beta-helix |Clavaminate synthase-like |TehB-like |Tellurite resistance protein B, TehB |Vibrio fischeri [TaxId: 668]
d1ny711 : (GLY68) (ARG164) [view usage] : b.121.4.2 |Nucleoplasmin-like/VP (viral coat and capsid proteins) |Positive stranded ssRNA viruses |Comoviridae-like VP |Comovirus coat proteins (VP37 and VP23) |CPMV (Cowpea mosaic virus) [TaxId: 12264]
d1sefa_ : (ILE84) (ALA143) [view usage] : b.82.1.11 |Double-stranded beta-helix |RmlC-like cupins |YlbA-like |Hypothetical protein EF2996 |Enterococcus faecalis [TaxId: 1351]
d1zz8a2 : (GLY140) (PHE198) [view usage] : b.82.1.10 |Double-stranded beta-helix |RmlC-like cupins |TM1459-like |Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain |Streptomyces wedmorensis [TaxId: 43759]
d2ozjb_ : (ASP58) (ASP110) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Desulfitobacterium hafniense [TaxId: 272564]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82, b.18, b.121