Tableau information
Concept source: d1q4oa2 amino acid (a.a.) range (ARG512)(ARG563)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: EEEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ARG512) (ARG518) E1
(ALA520) (SER526) E2
(GLY528) (PHE534) E3
(HIS538) (CYS544) E4
(ALA548) (ASP554) E5
(PHE559) (ARG563) E6
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 173.9° E2
E3 -20.2° 165.0° E3
E4 147.3° -27.1° 167.1° E4
E5 -43.6° 141.3° -23.7° 166.2° E5
E6 111.7° -62.8° 131.9° -35.7° 154.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.2° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2fgqx_ : (LEU208) (ASP299) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |automated matches |Delftia acidovorans [TaxId: 80866]
d2xe5a_ : (GLY176) (ASN281) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |automated matches |Escherichia coli [TaxId: 562]
d3mhab_ : (HIS59) (GLY124) [view usage] : b.125.1.0 |LolA-like prokaryotic lipoproteins and lipoprotein localization factors |Prokaryotic lipoproteins and lipoprotein localization factors |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d3ckga_ : (LYS85) (LEU147) [view usage] : b.76.1.1 |open-sided beta-meander |Outer surface protein |Outer surface protein |automated matches |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
d2fbea1 : (THR57) (TRP122) [view usage] : b.29.1.22 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |SPRY domain |Similar to Ret finger protein-like 1 |Human (Homo sapiens) [TaxId: 9606]
d2xe1a_ : (GLY183) (GLY286) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |automated matches |Escherichia coli [TaxId: 562]
d3p2wa1 : (SER412) (LEU463) [view usage] : d.223.1.2 |Polo-box domain |Polo-box domain |Polo-box duplicated region |Serine/threonine-protein kinase plk C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1xeaa2 : (ARG199) (LEU256) [view usage] : d.81.1.5 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Glucose 6-phosphate dehydrogenase-like |Putative oxidoreductase VCA1048 |Vibrio cholerae [TaxId: 666]
d2giya1 : (GLU326) (PRO389) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Alphaherpesvirus glycoprotein E |Human herpesvirus 1 [TaxId: 10298]
d1qjsa2 : (SER253) (LEU310) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |Hemopexin |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d2xe2a_ : (GLY176) (LYS278) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |automated matches |Escherichia coli [TaxId: 562]
d1ilda_ : (THR160) (GLY244) [view usage] : f.4.2.1 |Transmembrane beta-barrels |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Escherichia coli [TaxId: 562]
d2fgra_ : (LEU208) (ASP299) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |automated matches |Delftia acidovorans [TaxId: 80866]
d1itva_ : (ARG73) (ASP139) [view usage] : b.66.1.1 |4-bladed beta-propeller |Hemopexin-like domain |Hemopexin-like domain |Gelatinase B (MMP-9) |Human (Homo sapiens) [TaxId: 9606]
d1q4oa1 : (SER412) (TYR462) [view usage] : d.223.1.2 |Polo-box domain |Polo-box domain |Polo-box duplicated region |Serine/threonine-protein kinase plk C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4n7ia_ : (CYS357) (PRO424) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2voka_ : (ALA62) (GLN128) [view usage] : b.29.1.22 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |SPRY domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3ckfa_ : (LYS85) (ALA150) [view usage] : b.76.1.1 |open-sided beta-meander |Outer surface protein |Outer surface protein |automated matches |Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
d3t3la_ : (ASP124) (HIS177) [view usage] : d.82.2.1 |N domain of copper amine oxidase-like |Frataxin/Nqo15-like |Frataxin-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1umwa1 : (SER412) (LEU463) [view usage] : d.223.1.2 |Polo-box domain |Polo-box domain |Polo-box duplicated region |Serine/threonine-protein kinase plk C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2gj7e1 : (GLU326) (PRO389) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Alphaherpesvirus glycoprotein E |Human herpesvirus 1 [TaxId: 10298]
d3s5da_ : (TYR123) (HIS177) [view usage] : d.82.2.1 |N domain of copper amine oxidase-like |Frataxin/Nqo15-like |Frataxin-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1zh8a2 : (ASP220) (GLN275) [view usage] : d.81.1.5 |FwdE/GAPDH domain-like |Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |Glucose 6-phosphate dehydrogenase-like |Hypothetical protein TM0312 |Thermotoga maritima [TaxId: 2336]
d2yroa_ : (PRO18) (GLU83) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2giyb_ : (ALA325) (PRO389) [view usage] : b.1.1.1 |Immunoglobulin-like beta-sandwich |Immunoglobulin |V set domains (antibody variable domain-like) |Alphaherpesvirus glycoprotein E |Human herpesvirus 1 [TaxId: 10298]
d2ogqa1 : (SER412) (LEU463) [view usage] : d.223.1.2 |Polo-box domain |Polo-box domain |Polo-box duplicated region |Serine/threonine-protein kinase plk C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4ks3a_ : (SER311) (ARG378) [view usage] : b.68.1.0 |6-bladed beta-propeller |Sialidases |automated matches |automated matches |Influenza a virus [TaxId: 385580]
d1lshb_ : (PRO1358) (GLY1441) [view usage] : f.7.1.1 |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lipovitellin-phosvitin complex; beta-sheet shell regions |Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
d2xe3a_ : (GLY176) (ASN281) [view usage] : f.4.3.1 |Transmembrane beta-barrels |Porins |Porin |automated matches |Escherichia coli [TaxId: 562]
d2p3pa1 : (PHE102) (THR168) [view usage] : d.383.1.1 |PG1388-like |PG1388-like |PG1388-like |Hypothetical protein PG1388 |Porphyromonas gingivalis [TaxId: 837]
d4ec2a_ : (PRO100) (ARG153) [view usage] : d.82.2.1 |N domain of copper amine oxidase-like |Frataxin/Nqo15-like |Frataxin-like |C-terminal domain of frataxin |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2ygta_ : (ILE9) (ARG86) [view usage] : f.6.1.0 |Leukocidin-like |Leukocidin-like |automated matches |automated matches |Clostridium perfringens [TaxId: 1502]
d3oeqa_ : (PRO100) (ARG153) [view usage] : d.82.2.1 |N domain of copper amine oxidase-like |Frataxin/Nqo15-like |Frataxin-like |C-terminal domain of frataxin |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2a0aa1 : (GLY67) (ILE131) [view usage] : b.60.1.2 |Lipocalins |Lipocalins |Fatty acid binding protein-like |Der f 13 allergen |House dust mite (Dermatophagoides farinae) [TaxId: 6954]
d2eakb_ : (GLN7) (ASN79) [view usage] : b.29.1.0 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1im0a_ : (THR160) (GLY244) [view usage] : f.4.2.1 |Transmembrane beta-barrels |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Outer membrane phospholipase A (OMPLA) |Escherichia coli [TaxId: 562]
d1by3a_ : (VAL540) (LEU666) [view usage] : f.4.3.3 |Transmembrane beta-barrels |Porins |Ligand-gated protein channel |Ferric hydroxamate uptake receptor FhuA |Escherichia coli [TaxId: 562]
d3c5la1 : (SER412) (LEU463) [view usage] : d.223.1.2 |Polo-box domain |Polo-box domain |Polo-box duplicated region |Serine/threonine-protein kinase plk C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1a78a_ : (GLY4) (SER71) [view usage] : b.29.1.3 |Concanavalin A-like lectins/glucanases |Concanavalin A-like lectins/glucanases |Galectin (animal S-lectin) |Galectin-1 |Toad (Bufo arenarum) [TaxId: 38577]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.68, b.29, b.76, f.4, b.60, d.81, b.1, b.125, d.223, d.82, b.66, f.7, d.383, f.6