Tableau information
Concept source: d3p9wa_ amino acid (a.a.) range (GLU44)(CYS104)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: EEEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU44) (PRO49) E1
(SER50) (MET55) E2
(THR71) (GLN79) E3
(GLN79) (LYS84) E4
(GLY88) (LEU97) E5
(ASN100) (CYS104) E6
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 48.1° E2
E3 97.8° 140.1° E3
E4 148.5° -154.1° -65.8° E4
E5 -73.0° -26.7° -165.0° 127.8° E5
E6 -100.2° -75.4° -139.9° 80.6° 54.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.3° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2vpfc_ : (GLU44) (CYS104) [view usage] : g.17.1.1 |Cystine-knot cytokines |Cystine-knot cytokines |Platelet-derived growth factor-like |Vascular endothelial growth factor, VEGF |Human (Homo sapiens) [TaxId: 9606]
d2xv7a_ : (THR128) (CYS191) [view usage] : g.17.1.0 |Cystine-knot cytokines |Cystine-knot cytokines |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1rv6w_ : (HIS53) (CYS112) [view usage] : g.17.1.1 |Cystine-knot cytokines |Cystine-knot cytokines |Platelet-derived growth factor-like |Placenta growth factor-1, PLGF-1 |Human (Homo sapiens) [TaxId: 9606]
d3p9wg_ : (GLU44) (CYS104) [view usage] : g.17.1.1 |Cystine-knot cytokines |Cystine-knot cytokines |Platelet-derived growth factor-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wq8a_ : (ASP33) (CYS93) [view usage] : g.17.1.1 |Cystine-knot cytokines |Cystine-knot cytokines |Platelet-derived growth factor-like |Vascular endothelial growth factor, VEGF |Aspic viper (Vipera aspis aspis) [TaxId: 8706]
d3p9wa_ : (GLU44) (CYS104) [view usage] : g.17.1.1 |Cystine-knot cytokines |Cystine-knot cytokines |Platelet-derived growth factor-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
g.17