Tableau information
Concept source: d1vj2a_ amino acid (a.a.) range (TRP56)(PRO109)
nSSEs in this Concept: 6
String of secondary struct.elems. (SSEs) defining this concept: EEEEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TRP56) (VAL62) E1
(GLY65) (LYS71) E2
(GLY74) (GLU80) E3
(GLY81) (GLU87) E4
(GLU90) (ASN96) E5
(SER100) (PRO109) E6
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 -152.3° E2
E3 -48.3° 154.7° E3
E4 171.5° 20.3° -140.2° E4
E5 29.9° 148.0° -56.8° -148.4° E5
E6 144.1° -53.8° 101.0° -42.9° -153.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1vj2a_ : (TRP56) (PRO109) [view usage] : b.82.1.10 |Double-stranded beta-helix |RmlC-like cupins |TM1459-like |Hypothetical protein TM1459 |Thermotoga maritima [TaxId: 2336]
d4hsla_ : (LEU55) (ARG111) [view usage] : b.82.1.20 |Double-stranded beta-helix |RmlC-like cupins |3-hydroxyanthranilic acid dioxygenase-like |3-hydroxyanthranilate-3,4-dioxygenase |Ralstonia metallidurans [TaxId: 119219]
d2bdra1 : (SER80) (LEU139) [view usage] : b.82.1.14 |Double-stranded beta-helix |RmlC-like cupins |Ureidoglycolate hydrolase AllA |Ureidoglycolate hydrolase AllA |Pseudomonas putida [TaxId: 303]
d2oyza1 : (ALA41) (TYR93) [view usage] : b.82.1.22 |Double-stranded beta-helix |RmlC-like cupins |VPA0057-like |Uncharacterized protein VPA0057 |Vibrio parahaemolyticus [TaxId: 670]
d2b5ha_ : (HIS92) (SER158) [view usage] : b.82.1.19 |Double-stranded beta-helix |RmlC-like cupins |Cysteine dioxygenase type I |Cysteine dioxygenase type I |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2b8ma1 : (TYR47) (PRO101) [view usage] : b.82.1.18 |Double-stranded beta-helix |RmlC-like cupins |MJ0764-like |Hypothetical protein MJ0764 |Methanococcus jannaschii [TaxId: 2190]
d1y3ta1 : (THR240) (PRO292) [view usage] : b.82.1.5 |Double-stranded beta-helix |RmlC-like cupins |Quercetin 2,3-dioxygenase-like |Hypothetical protein YxaG |Bacillus subtilis [TaxId: 1423]
d3esgb_ : (GLN60) (SER114) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Pseudomonas fluorescens [TaxId: 216595]
d4axoa_ : (ASP99) (PRO150) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d4o9ga_ : (LYS55) (LEU111) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]
d1yfua1 : (LEU55) (ARG111) [view usage] : b.82.1.20 |Double-stranded beta-helix |RmlC-like cupins |3-hydroxyanthranilic acid dioxygenase-like |3-hydroxyanthranilate-3,4-dioxygenase |Ralstonia metallidurans [TaxId: 119219]
d2beoa2 : (PRO34) (LYS98) [view usage] : b.82.3.3 |Double-stranded beta-helix |cAMP-binding domain-like |Listeriolysin regulatory protein PrfA, N-terminal domain |automated matches |Listeria monocytogenes [TaxId: 169963]
d1ft9a2 : (GLY43) (ARG91) [view usage] : b.82.3.1 |Double-stranded beta-helix |cAMP-binding domain-like |CO-sensing protein CooA, N-terminal domain |CO-sensing protein CooA, N-terminal domain |Rhodospirillum rubrum [TaxId: 1085]
d1y9qa2 : (VAL126) (PHE173) [view usage] : b.82.1.15 |Double-stranded beta-helix |RmlC-like cupins |Probable transcriptional regulator VC1968, C-terminal domain |Probable transcriptional regulator VC1968, C-terminal domain |Vibrio cholerae [TaxId: 666]
d2h6ba2 : (MET53) (SER108) [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |Chlorophenol reduction protein CprK |Desulfitobacterium hafniense [TaxId: 49338]
d2fmya1 : (VAL49) (ASP99) [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Carboxydothermus hydrogenoformans [TaxId: 129958]
d2f4pa1 : (GLY56) (GLN111) [view usage] : b.82.1.9 |Double-stranded beta-helix |RmlC-like cupins |TM1287-like |Hypothetical protein TM1010 |Thermotoga maritima [TaxId: 2336]
d1yllc_ : (GLN60) (ALA114) [view usage] : b.82.1.17 |Double-stranded beta-helix |RmlC-like cupins |PA5104-like |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1vr3a1 : (ASP92) (VAL150) [view usage] : b.82.1.6 |Double-stranded beta-helix |RmlC-like cupins |Acireductone dioxygenase |Acireductone dioxygenase |Mouse (Mus musculus) [TaxId: 10090]
d3d0sb1 : (ASP45) (ARG106) [view usage] : b.82.3.0 |Double-stranded beta-helix |cAMP-binding domain-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d2pytb_ : (TYR171) (PRO223) [view usage] : b.82.1.24 |Double-stranded beta-helix |RmlC-like cupins |EutQ-like |Ethanolamine utilization protein EutQ |Salmonella typhimurium [TaxId: 90371]
d4o9ea_ : (LYS55) (ALA112) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]
d2bgcb2 : (CYS38) (LYS98) [view usage] : b.82.3.3 |Double-stranded beta-helix |cAMP-binding domain-like |Listeriolysin regulatory protein PrfA, N-terminal domain |automated matches |Listeria monocytogenes [TaxId: 169963]
d2pyta1 : (ASP172) (PRO223) [view usage] : b.82.1.24 |Double-stranded beta-helix |RmlC-like cupins |EutQ-like |Ethanolamine utilization protein EutQ |Salmonella typhimurium [TaxId: 90371]
d3esga_ : (GLN60) (SER114) [view usage] : b.82.1.0 |Double-stranded beta-helix |RmlC-like cupins |automated matches |automated matches |Pseudomonas fluorescens [TaxId: 216595]
d1v70a_ : (ASP50) (ALA102) [view usage] : b.82.1.9 |Double-stranded beta-helix |RmlC-like cupins |TM1287-like |Hypothetical protein TTHA0104 |Thermus thermophilus [TaxId: 274]
d1omia1 : (PRO1034) (LYS1098) [view usage] : b.82.3.3 |Double-stranded beta-helix |cAMP-binding domain-like |Listeriolysin regulatory protein PrfA, N-terminal domain |Listeriolysin regulatory protein PrfA, N-terminal domain |Listeria monocytogenes [TaxId: 1639]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
b.82