Protein Concepts Dictionary

Tableau information

Concept source:  d2bm7b_  amino acid (a.a.) range (PRO81)(ASP116)

nSSEs in this Concept: 6

String of secondary struct.elems. (SSEs) defining this concept: EEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PRO81)   (ASP86) E1
	   (ASP86)   (LEU91) E2
	   (LEU91)   (GLY96) E3
	  (GLY101)  (GLY106) E4
	  (GLY106)  (GLU111) E5
	  (GLU111)  (ASP116) E6

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                        
E2      -90.3°   E2                                 
E3     -162.0°  -86.9°   E3                          
E4       -7.0°  -92.5° -168.9°   E4                   
E5       86.6°   -5.3°  -91.6°  -88.3°   E5            
E6     -159.9°   82.2°   -4.8° -166.9°  -87.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.9°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2bm7c_ :    (ALA92)  (GLY126)   [view usage] : b.80.8.1 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |Pentapeptide repeats |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d2bm7b_ :   (GLY101)  (GLY136)   [view usage] : b.80.8.1 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |Pentapeptide repeats |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d2g0ya_ :    (ALA62)   (ASP96)   [view usage] : b.80.8.1 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |Pentapeptide repeats |Lumenal RFR-domain protein |Cyanothece sp. atcc 51142 [TaxId: 43989]
 d2j8ia1 :    (ALA60)   (GLU94)   [view usage] : b.80.8.1 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |Pentapeptide repeats |NP275-NP276 |Nostoc punctiforme [TaxId: 272131]
 d2iq7f_ :   (GLY306)  (LYS350)   [view usage] : b.80.1.3 |Single-stranded right-handed beta-helix |Pectin lyase-like |Galacturonase |automated matches |Colletotrichum lupini [TaxId: 145971]
 d2iq7a_ :   (GLY301)  (LYS350)   [view usage] : b.80.1.3 |Single-stranded right-handed beta-helix |Pectin lyase-like |Galacturonase |automated matches |Colletotrichum lupini [TaxId: 145971]
 d2bm4a1 :    (ASP86)  (LYS121)   [view usage] : b.80.8.1 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |Pentapeptide repeats |Hypothetical protein Rv3361c (MT3469) |Mycobacterium tuberculosis [TaxId: 1773]
 d2bm4b_ :    (ARG21)   (ARG56)   [view usage] : b.80.8.1 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |Pentapeptide repeats |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d2j8ka1 :    (ALA70)  (ALA104)   [view usage] : b.80.8.1 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |Pentapeptide repeats |NP275-NP276 |Nostoc punctiforme [TaxId: 272131]
 d2j8ka1 :   (ALA135)  (GLY169)   [view usage] : b.80.8.1 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |Pentapeptide repeats |NP275-NP276 |Nostoc punctiforme [TaxId: 272131]
 d2bm5b_ :    (ASP86)  (LYS121)   [view usage] : b.80.8.1 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |Pentapeptide repeats |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d2bm6a_ :    (ARG21)   (ARG56)   [view usage] : b.80.8.1 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |Pentapeptide repeats |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d2bm6a_ :    (SER62)   (GLY96)   [view usage] : b.80.8.1 |Single-stranded right-handed beta-helix |Pentapeptide repeat-like |Pentapeptide repeats |automated matches |Mycobacterium tuberculosis [TaxId: 83332]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.80