Tableau information
Concept source: d1jmsa3 amino acid (a.a.) range (ASP243)(SER301)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP243) (SER254) H1
(LEU260) (GLY270) H2
(LEU274) (ASP280) H3
(THR286) (TYR295) H4
(TYR295) (SER301) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 127.2° H2
H3 -57.4° 89.1° H3
H4 91.1° -74.1° -123.6° H4
H5 105.7° -118.5° 150.9° -76.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2o6kb_ : (SER5) (GLU75) [view usage] : a.60.15.1 |SAM domain-like |YozE-like |YozE-like |Uncharacterized protein MW1311 |Staphylococcus aureus [TaxId: 1280]
d1jmsa3 : (ASP243) (SER301) [view usage] : a.60.12.1 |SAM domain-like |PsbU/PolX domain-like |DNA polymerase beta-like, second domain |Terminal deoxynucleotidyl transferase |Mouse (Mus musculus) [TaxId: 10090]
d1ut5a1 : (ASP188) (VAL260) [view usage] : a.60.7.1 |SAM domain-like |5' to 3' exonuclease, C-terminal subdomain |5' to 3' exonuclease, C-terminal subdomain |T5 5'-exonuclease |Bacteriophage T5 [TaxId: 10726]
d1bpxa3 : (THR93) (LYS148) [view usage] : a.60.12.1 |SAM domain-like |PsbU/PolX domain-like |DNA polymerase beta-like, second domain |DNA polymerase beta |Human (Homo sapiens) [TaxId: 9606]
d1bvsb2 : (ALA65) (LEU127) [view usage] : a.60.2.1 |SAM domain-like |RuvA domain 2-like |DNA helicase RuvA subunit, middle domain |DNA helicase RuvA subunit, middle domain |Mycobacterium leprae [TaxId: 1769]
d1xo1a1 : (VAL189) (VAL260) [view usage] : a.60.7.1 |SAM domain-like |5' to 3' exonuclease, C-terminal subdomain |5' to 3' exonuclease, C-terminal subdomain |T5 5'-exonuclease |Bacteriophage T5 [TaxId: 10726]
d1rpla1 : (SER95) (LYS148) [view usage] : a.60.12.1 |SAM domain-like |PsbU/PolX domain-like |DNA polymerase beta-like, second domain |DNA polymerase beta |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2ihma2 : (SER231) (THR288) [view usage] : a.60.12.0 |SAM domain-like |PsbU/PolX domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1rzta2 : (SER329) (GLU385) [view usage] : a.60.12.1 |SAM domain-like |PsbU/PolX domain-like |DNA polymerase beta-like, second domain |DNA polymerase lambda |Human (Homo sapiens) [TaxId: 9606]
d1exna1 : (ASP188) (VAL260) [view usage] : a.60.7.1 |SAM domain-like |5' to 3' exonuclease, C-terminal subdomain |5' to 3' exonuclease, C-terminal subdomain |T5 5'-exonuclease |Bacteriophage T5 [TaxId: 10726]
d2fj6a1 : (SER3) (ARG74) [view usage] : a.60.15.1 |SAM domain-like |YozE-like |YozE-like |Hypothetical protein YozE |Bacillus subtilis [TaxId: 1423]
d1exnb1 : (ASP188) (VAL260) [view usage] : a.60.7.1 |SAM domain-like |5' to 3' exonuclease, C-terminal subdomain |5' to 3' exonuclease, C-terminal subdomain |T5 5'-exonuclease |Bacteriophage T5 [TaxId: 10726]
d3ayxa_ : (ASP141) (TYR288) [view usage] : e.18.1.0 |HydB/Nqo4-like |HydB/Nqo4-like |automated matches |automated matches |Hydrogenovibrio marinus [TaxId: 28885]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.18, a.60