Tableau information
Concept source: d2pf4a_ amino acid (a.a.) range (PRO179)(GLU253)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO179) (LYS194) H1
(GLU197) (SER203) H2
(ILE205) (ASP215) H3
(ASP218) (LEU235) H4
(LEU240) (GLU253) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -143.4° H2
H3 -141.0° -34.8° H3
H4 7.5° -142.1° -146.7° H4
H5 -141.3° 44.0° 10.8° -148.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2cfza2 : (ALA449) (GLY519) [view usage] : d.157.1.13 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Alkylsulfatase-like |Alkylsulfatase SdsA1 |Pseudomonas aeruginosa [TaxId: 287]
d2e22a1 : (GLY192) (TYR293) [view usage] : a.102.3.2 |alpha/alpha toroid |Chondroitin AC/alginate lyase |Hyaluronate lyase-like catalytic, N-terminal domain |automated matches |Bacillus sp. [TaxId: 84635]
d2gh4a_ : (ARG213) (LYS315) [view usage] : a.102.1.6 |alpha/alpha toroid |Six-hairpin glycosidases |Hypothetical protein YteR |Hypothetical protein YteR |Bacillus subtilis [TaxId: 1423]
d2grmb2 : (THR75) (THR133) [view usage] : a.118.8.4 |alpha-alpha superhelix |TPR-like |PrgX C-terminal domain-like |automated matches |Enterococcus faecalis [TaxId: 1351]
d3sfgc_ : (ARG411) (GLY491) [view usage] : e.8.1.4 |DNA/RNA polymerases |DNA/RNA polymerases |RNA-dependent RNA-polymerase |automated matches |Murine norovirus 1 [TaxId: 223997]
d1nxca_ : (ALA192) (GLY299) [view usage] : a.102.2.1 |alpha/alpha toroid |Seven-hairpin glycosidases |Class I alpha-1;2-mannosidase, catalytic domain |Class I alpha-1;2-mannosidase, catalytic domain |Mouse (Mus musculus) [TaxId: 10090]
d2c74a_ : (GLU141) (ASP236) [view usage] : a.118.7.1 |alpha-alpha superhelix |14-3-3 protein |14-3-3 protein |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1i5nd_ : (ALA37) (GLU133) [view usage] : a.24.10.3 |Four-helical up-and-down bundle |Histidine-containing phosphotransfer domain, HPT domain |Chemotaxis protein CheA P1 domain |Chemotaxis protein CheA P1 domain |Salmonella typhimurium [TaxId: 90371]
d1ufaa1 : (THR418) (ASP504) [view usage] : a.8.3.3 |immunoglobulin/albumin-binding domain-like |Families 57/38 glycoside transferase middle domain |AmyC C-terminal domain-like |Hypothetical protein TT1467, domain 2 |Thermus thermophilus [TaxId: 274]
d3p1pa_ : (SER149) (TRP230) [view usage] : a.118.7.1 |alpha-alpha superhelix |14-3-3 protein |14-3-3 protein |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1gw6a1 : (SER495) (GLN561) [view usage] : a.118.1.7 |alpha-alpha superhelix |ARM repeat |Leukotriene A4 hydrolase C-terminal domain |Leukotriene A4 hydrolase C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2axzb2 : (ASN73) (THR133) [view usage] : a.118.8.4 |alpha-alpha superhelix |TPR-like |PrgX C-terminal domain-like |automated matches |Enterococcus faecalis [TaxId: 1351]
d2avpa1 : (GLU2) (ASP65) [view usage] : k.38.1.1 |TPR domain-based design |TPR domain-based design |TPR domain-based design |An 8 repeat consensus TPR superhelix |Synthetic
d3oxua_ : (ASP3) (ALA96) [view usage] : a.102.4.4 |alpha/alpha toroid |Terpenoid cyclases/Protein prenyltransferases |Complement components |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1qgka_ : (LEU524) (GLN616) [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin beta |Human (Homo sapiens) [TaxId: 9606]
d2nyla1 : (LEU189) (GLU253) [view usage] : a.118.1.2 |alpha-alpha superhelix |ARM repeat |HEAT repeat |Constant regulatory domain of protein phosphatase 2a, pr65alpha |Human (Homo sapiens) [TaxId: 9606]
d1z1wa4 : (THR695) (THR777) [view usage] : a.118.1.26 |alpha-alpha superhelix |ARM repeat |ERAP1 C-terminal-like |Tricorn protease interacting factor F3 C-terminal domain |Thermoplasma acidophilum [TaxId: 2303]
d1cb8a1 : (GLU193) (ILE276) [view usage] : a.102.3.2 |alpha/alpha toroid |Chondroitin AC/alginate lyase |Hyaluronate lyase-like catalytic, N-terminal domain |Chondroitinase AC |Pedobacter heparinus (Flavobacterium heparinum) [TaxId: 984]
d3zykb2 : (GLY154) (GLY258) [view usage] : a.7.8.0 |Spectrin repeat-like |GAT-like domain |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2cg2a2 : (ALA449) (HIS518) [view usage] : d.157.1.13 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |Alkylsulfatase-like |Alkylsulfatase SdsA1 |Pseudomonas aeruginosa [TaxId: 287]
d2vglb_ : (PRO100) (ILE169) [view usage] : a.118.1.10 |alpha-alpha superhelix |ARM repeat |Clathrin adaptor core protein |Adaptin beta subunit N-terminal fragment |Human (Homo sapiens) [TaxId: 9606]
d2vglb_ : (ILE459) (ARG528) [view usage] : a.118.1.10 |alpha-alpha superhelix |ARM repeat |Clathrin adaptor core protein |Adaptin beta subunit N-terminal fragment |Human (Homo sapiens) [TaxId: 9606]
d3zyka2 : (GLY154) (GLY258) [view usage] : a.7.8.0 |Spectrin repeat-like |GAT-like domain |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2grmc2 : (THR75) (THR133) [view usage] : a.118.8.4 |alpha-alpha superhelix |TPR-like |PrgX C-terminal domain-like |automated matches |Enterococcus faecalis [TaxId: 1351]
d3zyla2 : (GLY154) (GLY258) [view usage] : a.7.8.0 |Spectrin repeat-like |GAT-like domain |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1lrva_ : (ASP159) (ASP205) [view usage] : a.118.1.5 |alpha-alpha superhelix |ARM repeat |Leucine-rich repeat variant |Leucine-rich repeat variant |Azotobacter vinelandii [TaxId: 354]
d1qsaa1 : (LEU68) (LEU130) [view usage] : a.118.5.1 |alpha-alpha superhelix |Bacterial muramidases |Bacterial muramidases |70 KDa soluble lytic transglycosylase (SLT70), superhelical domain |Escherichia coli [TaxId: 562]
d1egca2 : (THR17) (ILE110) [view usage] : e.6.1.1 |Acyl-CoA dehydrogenase NM domain-like |Acyl-CoA dehydrogenase NM domain-like |Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains |Medium chain acyl-CoA dehydrogenase, NM domains |Human (Homo sapiens) [TaxId: 9606]
d1gxoa_ : (THR410) (MET544) [view usage] : a.102.5.1 |alpha/alpha toroid |Family 10 polysaccharide lyase |Family 10 polysaccharide lyase |Polygalacturonic acid lyase (pectate lyase) |Cellvibrio cellulosa [TaxId: 155077]
d1sqma1 : (SER495) (THR559) [view usage] : a.118.1.7 |alpha-alpha superhelix |ARM repeat |Leukotriene A4 hydrolase C-terminal domain |Leukotriene A4 hydrolase C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d2yhea1 : (ALA461) (GLY531) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas sp. [TaxId: 1007495]
d1nc5a_ : (ARG213) (LYS315) [view usage] : a.102.1.6 |alpha/alpha toroid |Six-hairpin glycosidases |Hypothetical protein YteR |Hypothetical protein YteR |Bacillus subtilis [TaxId: 1423]
d2jkrb_ : (PRO442) (SER514) [view usage] : a.118.1.10 |alpha-alpha superhelix |ARM repeat |Clathrin adaptor core protein |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1h54a1 : (ARG428) (ASP525) [view usage] : a.102.1.4 |alpha/alpha toroid |Six-hairpin glycosidases |Glycosyltransferase family 36 C-terminal domain |Lactobacillus maltose phosphorylase, central domain |Lactobacillus brevis [TaxId: 1580]
d3p0ba2 : (LEU419) (ARG503) [view usage] : a.8.3.0 |immunoglobulin/albumin-binding domain-like |Families 57/38 glycoside transferase middle domain |automated matches |automated matches |Thermus thermophilus [TaxId: 274]
d1lsha1 : (SER388) (ALA468) [view usage] : a.118.4.1 |alpha-alpha superhelix |Lipovitellin-phosvitin complex, superhelical domain |Lipovitellin-phosvitin complex, superhelical domain |Lipovitellin-phosvitin complex, superhelical domain |Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
d1gcja_ : (TRP380) (ASP446) [view usage] : a.118.1.1 |alpha-alpha superhelix |ARM repeat |Armadillo repeat |Importin beta |Mouse (Mus musculus) [TaxId: 10090]
d3bx3b_ : (HIS795) (LEU867) [view usage] : a.118.1.0 |alpha-alpha superhelix |ARM repeat |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2kysa_ : (VAL13) (THR83) [view usage] : a.8.9.1 |immunoglobulin/albumin-binding domain-like |Coronavirus NSP7-like |Coronavirus NSP7-like |automated matches |SARS coronavirus [TaxId: 227859]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, a.118, d.157, a.102, e.6, k.38, a.24, a.8, a.7