Tableau information
Concept source: d1k82a1 amino acid (a.a.) range (GLU140)(GLY212)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU140) (CYS146) H1
(CYS146) (LYS149) H2
(ILE153) (ASP159) H3
(GLY167) (GLY179) H4
(SER190) (GLY212) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -43.2° H2
H3 112.4° 152.5° H3
H4 -108.3° -76.7° 130.1° H4
H5 116.9° 118.2° -55.1° 125.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2pkka_ : (GLY254) (LEU323) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d3d3ca_ : (ASN58) (ARG135) [view usage] : a.79.1.1 |NusB-like |NusB-like |Antitermination factor NusB |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1tuza_ : (VAL27) (GLY108) [view usage] : a.39.1.7 |EF Hand-like |EF-hand |EF-hand modules in multidomain proteins |Diacylglycerol kinase alpha, N-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d4h2wc_ : (HIS0) (LEU77) [view usage] : a.28.1.1 |Acyl carrier protein-like |ACP-like |Acyl-carrier protein (ACP) |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d2z44a_ : (GLU2) (GLN111) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Synechococcus sp. [TaxId: 32049]
d2yula_ : (ASN13) (HIS72) [view usage] : a.21.1.0 |HMG-box |HMG-box |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2gv5d_ : (GLU19) (ARG92) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1k3xa1 : (THR135) (ALA210) [view usage] : a.156.1.2 |S13-like H2TH domain |S13-like H2TH domain |Middle domain of MutM-like DNA repair proteins |Endonuclease VIII |Escherichia coli [TaxId: 562]
d1k3wa1 : (PRO136) (ALA210) [view usage] : a.156.1.2 |S13-like H2TH domain |S13-like H2TH domain |Middle domain of MutM-like DNA repair proteins |Endonuclease VIII |Escherichia coli [TaxId: 562]
d1niwa_ : (GLU7) (ASP78) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1boda_ : (SER2) (GLN67) [view usage] : a.39.1.1 |EF Hand-like |EF-hand |Calbindin D9K |Calbindin D9K |Cow (Bos taurus) [TaxId: 9913]
d2pkfa_ : (VAL255) (LEU323) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1xsva_ : (LEU6) (LYS72) [view usage] : a.4.13.3 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |YlxM/p13-like |Hypothetical protein SAV1236 |Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]
d1llfa_ : (GLY342) (HIS425) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Type-B carboxylesterase/lipase |Candida cylindracea, cholesterol esterase [TaxId: 44322]
d1bnoa_ : (GLY14) (LYS81) [view usage] : a.60.6.1 |SAM domain-like |DNA polymerase beta, N-terminal domain-like |DNA polymerase beta, N-terminal domain-like |DNA polymerase beta, N-terminal (8 kD)-domain |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4ggnc_ : (ASN141) (SER205) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Plasmodium knowlesi [TaxId: 5851]
d2fq3a1 : (ASN315) (GLY389) [view usage] : a.4.1.18 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |SWIRM domain |Transcription regulatory protein swi3 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3h4ec2 : (ARG162) (CYS218) [view usage] : a.28.3.0 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |automated matches |automated matches |Human immunodeficiency virus type 1 (new york-5 isolate) [TaxId: 11698]
d3m0wa_ : (CYS3) (GLU91) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |Calcyclin (S100) |Human (Homo sapiens), s100a4 [TaxId: 9606]
d1crla_ : (GLY342) (HIS425) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Type-B carboxylesterase/lipase |Fungus (Candida rugosa), formerly Cylindracea [TaxId: 5481]
d4oiya_ : (MET931) (ASN1008) [view usage] : a.118.3.0 |alpha-alpha superhelix |Sec7 domain |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d3fiaa_ : (SER11) (GLY91) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3b32a_ : (GLU6) (ARG74) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1ey1a_ : (ASN58) (ILE134) [view usage] : a.79.1.1 |NusB-like |NusB-like |Antitermination factor NusB |Antitermination factor NusB |Escherichia coli [TaxId: 562]
d1k82a1 : (GLU140) (GLY212) [view usage] : a.156.1.2 |S13-like H2TH domain |S13-like H2TH domain |Middle domain of MutM-like DNA repair proteins |DNA repair protein MutM (Fpg) |Escherichia coli [TaxId: 562]
d4h2xc_ : (HIS0) (ILE76) [view usage] : a.28.1.1 |Acyl carrier protein-like |ACP-like |Acyl-carrier protein (ACP) |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d4ggnb_ : (MET142) (SER205) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Plasmodium knowlesi [TaxId: 5851]
d2lmua_ : (THR5) (ARG77) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1eyvb_ : (ALA66) (MET139) [view usage] : a.79.1.1 |NusB-like |NusB-like |Antitermination factor NusB |Antitermination factor NusB |Mycobacterium tuberculosis [TaxId: 1773]
d2oq4b1 : (THR135) (ALA210) [view usage] : a.156.1.2 |S13-like H2TH domain |S13-like H2TH domain |Middle domain of MutM-like DNA repair proteins |Endonuclease VIII |Escherichia coli [TaxId: 562]
d2ovqb1 : (THR2263) (GLU2316) [view usage] : a.158.1.1 |F-box domain |F-box domain |F-box domain |F-box/WD repeat-containing protein 7, FBXW7 |Human (Homo sapiens) [TaxId: 9606]
d3i5fc_ : (THR4) (ASP79) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Todarodes pacificus [TaxId: 6637]
d1wlzb_ : (ARG233) (ARG309) [view usage] : a.39.1.7 |EF Hand-like |EF-hand |EF-hand modules in multidomain proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2edua1 : (SER19) (GLN98) [view usage] : a.60.2.7 |SAM domain-like |RuvA domain 2-like |ComEA-like |KIF22, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1n0ya_ : (THR5) (LEU85) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Ciliate (Paramecium tetraurelia) [TaxId: 5888]
d1fi6a_ : (THR9) (ASN82) [view usage] : a.39.1.6 |EF Hand-like |EF-hand |Eps15 homology domain (EH domain) |Reps1 |Mouse (Mus musculus) [TaxId: 10090]
d3pmlb1 : (ASN251) (GLY320) [view usage] : a.60.6.1 |SAM domain-like |DNA polymerase beta, N-terminal domain-like |DNA polymerase beta, N-terminal domain-like |DNA polymerase lambda |Human (Homo sapiens) [TaxId: 9606]
d1uhua_ : (THR7) (ASN92) [view usage] : a.61.1.6 |Retroviral matrix proteins |Retroviral matrix proteins |MMLV matrix protein-like |Product of RIKEN cDNA 3110009e22 |Unclassified, murine endogenous retrovirus [TaxId: 12908]
d1bmoa1 : (ASN206) (GLY274) [view usage] : a.39.1.3 |EF Hand-like |EF-hand |Osteonectin |C-terminal (EC) domain of BM-40/SPARC/osteonectin |Human (Homo sapiens) [TaxId: 9606]
d2x51b_ : (ASP81) (MET146) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d1wlza1 : (ASP232) (ARG309) [view usage] : a.39.1.7 |EF Hand-like |EF-hand |EF-hand modules in multidomain proteins |DJ-1-binding protein, DJBP |Human (Homo sapiens) [TaxId: 9606]
d1cmfa_ : (GLU83) (THR146) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Cow (Bos taurus) [TaxId: 9913]
d1or7a1 : (GLU125) (VAL185) [view usage] : a.4.13.2 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |Sigma4 domain |SigmaE factor (RpoE) |Escherichia coli [TaxId: 562]
d3fwcm_ : (GLU19) (ARG92) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2lola_ : (THR3) (GLN80) [view usage] : a.28.1.0 |Acyl carrier protein-like |ACP-like |automated matches |automated matches |Rickettsia prowazekii [TaxId: 272947]
d1wg8a1 : (ALA130) (ASN206) [view usage] : a.60.13.1 |SAM domain-like |Putative methyltransferase TM0872, insert domain |Putative methyltransferase TM0872, insert domain |Putative methyltransferase TM0872, insert domain |Thermus thermophilus [TaxId: 274]
d4ds7c_ : (ASN80) (LYS147) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |automated matches |Kluyveromyces lactis [TaxId: 284590]
d2cuja1 : (GLY37) (GLU102) [view usage] : a.4.1.18 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |SWIRM domain |Transcriptional adaptor 2-like, TADA2L |Mouse (Mus musculus) [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.69, a.118, c.72, a.4, a.39, a.79, a.60, a.28, a.61, a.280, a.21, a.156, a.158