Tableau information
Concept source: d2csda5 amino acid (a.a.) range (GLY466)(GLY517)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY466) (SER472) H1
(ARG478) (TYR488) H2
(TYR491) (ALA497) H3
(VAL499) (ASP505) H4
(ASP509) (GLY517) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 126.6° H2
H3 42.8° 85.3° H3
H4 -66.7° 142.9° -106.6° H4
H5 145.5° -64.1° -122.2° 127.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3cwsc1 : (ALA113) (GLU191) [view usage] : a.96.1.3 |DNA-glycosylase |DNA-glycosylase |DNA repair glycosylase, 2 C-terminal domains |3-Methyladenine DNA glycosylase II (gene alkA or aidA) |Escherichia coli [TaxId: 562]
d2csba4 : (TYR467) (LYS516) [view usage] : a.60.2.4 |SAM domain-like |RuvA domain 2-like |Topoisomerase V repeat domain |Topoisomerase V |Methanopyrus kandleri [TaxId: 2320]
d1kl9a1 : (SER90) (ARG182) [view usage] : a.60.14.1 |SAM domain-like |eIF2alpha middle domain-like |eIF2alpha middle domain-like |Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 |Human (Homo sapiens) [TaxId: 9606]
d1lmza_ : (ASP27) (GLU106) [view usage] : a.96.1.4 |DNA-glycosylase |DNA-glycosylase |3-Methyladenine DNA glycosylase I (Tag) |3-Methyladenine DNA glycosylase I (Tag) |Escherichia coli [TaxId: 562]
d1ngna_ : (PRO430) (LYS500) [view usage] : a.96.1.2 |DNA-glycosylase |DNA-glycosylase |Mismatch glycosylase |Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 |Mouse (Mus musculus) [TaxId: 10090]
d1diza1 : (ALA113) (GLU191) [view usage] : a.96.1.3 |DNA-glycosylase |DNA-glycosylase |DNA repair glycosylase, 2 C-terminal domains |3-Methyladenine DNA glycosylase II (gene alkA or aidA) |Escherichia coli [TaxId: 562]
d2csda5 : (GLY466) (GLY517) [view usage] : a.60.2.4 |SAM domain-like |RuvA domain 2-like |Topoisomerase V repeat domain |Topoisomerase V |Methanopyrus kandleri [TaxId: 2320]
d2dv1a2 : (ALA460) (GLN539) [view usage] : a.93.1.3 |Heme-dependent peroxidases |Heme-dependent peroxidases |Catalase-peroxidase KatG |Catalase-peroxidase KatG |Burkholderia pseudomallei [TaxId: 28450]
d2jnxa_ : (ASP69) (ALA131) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d1mwva2 : (ALA460) (GLN539) [view usage] : a.93.1.3 |Heme-dependent peroxidases |Heme-dependent peroxidases |Catalase-peroxidase KatG |Catalase-peroxidase KatG |Burkholderia pseudomallei [TaxId: 28450]
d1u2la_ : (THR446) (SER520) [view usage] : a.93.1.3 |Heme-dependent peroxidases |Heme-dependent peroxidases |Catalase-peroxidase KatG |Catalase-peroxidase KatG |Burkholderia pseudomallei [TaxId: 28450]
d4e9ea_ : (PRO456) (LYS526) [view usage] : a.96.1.2 |DNA-glycosylase |DNA-glycosylase |Mismatch glycosylase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4g05a_ : (ALA12) (GLN88) [view usage] : a.93.1.0 |Heme-dependent peroxidases |Heme-dependent peroxidases |automated matches |automated matches |Pleurotus eryngii [TaxId: 5323]
d1u2ka_ : (THR446) (SER520) [view usage] : a.93.1.3 |Heme-dependent peroxidases |Heme-dependent peroxidases |Catalase-peroxidase KatG |Catalase-peroxidase KatG |Burkholderia pseudomallei [TaxId: 28450]
d4dk9a_ : (PRO456) (LYS526) [view usage] : a.96.1.2 |DNA-glycosylase |DNA-glycosylase |Mismatch glycosylase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4lzda2 : (SER231) (HIS282) [view usage] : a.60.12.0 |SAM domain-like |PsbU/PolX domain-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ihoa_ : (PRO456) (LYS526) [view usage] : a.96.1.2 |DNA-glycosylase |DNA-glycosylase |Mismatch glycosylase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1u2ja_ : (THR446) (SER520) [view usage] : a.93.1.3 |Heme-dependent peroxidases |Heme-dependent peroxidases |Catalase-peroxidase KatG |Catalase-peroxidase KatG |Burkholderia pseudomallei [TaxId: 28450]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
a.93, a.96, a.39, a.60