Protein Concepts Dictionary

Tableau information

Concept source:  d1x86g1  amino acid (a.a.) range (ASN768)(ARG855)

nSSEs in this Concept: 5

String of secondary struct.elems. (SSEs) defining this concept: HHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ASN768)  (VAL773) H1
	  (SER774)  (LEU779) H2
	  (LYS782)  (GLY821) H3
	  (SER824)  (SER833) H4
	  (ASP837)  (ARG855) H5

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                 
H2      113.2°   H2                          
H3      113.1°  125.9°   H3                   
H4      -78.3°  -51.8°  165.0°   H4            
H5      -34.5°   84.9° -147.0°   43.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1hm4b_ :    (ALA40)  (GLY107)   [view usage] : a.128.1.4 |Terpenoid synthases |Terpenoid synthases |Aristolochene/pentalenene synthase |Pentalenene synthase |Streptomyces sp., UC5319 [TaxId: 1931]
 d1vhda_ :   (LEU254)  (GLY312)   [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Alcohol dehydrogenase TM0920 |Thermotoga maritima [TaxId: 2336]
 d3cb7a_ :    (ASN61)  (PHE126)   [view usage] : d.2.1.0 |Lysozyme-like |Lysozyme-like |automated matches |automated matches |House fly (Musca domestica) [TaxId: 7370]
 d1txda1 :   (ASN768)  (ARG855)   [view usage] : a.87.1.1 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |Rho guanine nucleotide exchange factor 12 |Human (Homo sapiens), gamma isoform [TaxId: 9606]
 d4g92b_ :    (LYS42)  (GLU132)   [view usage] : a.22.1.3 |Histone-fold |Histone-fold |TBP-associated factors, TAFs |automated matches |Aspergillus nidulans [TaxId: 227321]
 d1ckja_ :   (TYR230)  (GLY301)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Casein kinase-1, CK1 |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d1tj7b_ :    (THR51)  (ASN146)   [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |Argininosuccinate lyase/delta-crystallin |Escherichia coli [TaxId: 562]
 d1o2db_ :   (LEU254)  (GLY312)   [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Alcohol dehydrogenase TM0920 |Thermotoga maritima [TaxId: 2336]
 d1xcga1 :   (TRP716)  (ILE788)   [view usage] : a.87.1.1 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF |Human (Homo sapiens) [TaxId: 9606]
 d2zjwa_ :   (ARG280)  (VAL327)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3axwa_ :   (ARG280)  (ASP330)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4ki0g_ :   (SER186)  (LEU236)   [view usage] : f.58.1.1 |MetI-like |MetI-like |MetI-like |Maltose transport system permease protein MalG |Escherichia coli [TaxId: 562]
 d1x86g1 :   (ASN768)  (ARG855)   [view usage] : a.87.1.1 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |Rho guanine nucleotide exchange factor 12 |Human (Homo sapiens), gamma isoform [TaxId: 9606]
 d3nsza_ :   (ARG280)  (VAL327)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase CK2, alpha subunit |Human (Homo sapiens) [TaxId: 9606]
 d1gu9l_ :    (PRO49)  (ASN109)   [view usage] : a.152.1.1 |AhpD-like |AhpD-like |AhpD |Antioxidant defense protein AhpD |Mycobacterium tuberculosis [TaxId: 1773]
 d2noxa_ :    (SER42)  (MET133)   [view usage] : a.266.1.0 |Indolic compounds 2,3-dioxygenase-like |Indolic compounds 2,3-dioxygenase-like |automated matches |automated matches |Cupriavidus metallidurans [TaxId: 119219]
 d1o2da_ :   (LEU254)  (GLY312)   [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Alcohol dehydrogenase TM0920 |Thermotoga maritima [TaxId: 2336]
 d1x86e1 :   (ASN768)  (ARG855)   [view usage] : a.87.1.1 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |Rho guanine nucleotide exchange factor 12 |Human (Homo sapiens), gamma isoform [TaxId: 9606]
 d4i3fa_ :   (LYS152)  (VAL209)   [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Cycloclasticus sp. [TaxId: 385025]
 d1liaa_ :    (HIS48)  (ALA113)   [view usage] : a.1.1.3 |Globin-like |Globin-like |Phycocyanin-like phycobilisome proteins |Phycoerythrin alpha subunit |Red alga (Polysiphonia urceolata) [TaxId: 65404]
 d2noxd_ :    (SER42)  (MET133)   [view usage] : a.266.1.0 |Indolic compounds 2,3-dioxygenase-like |Indolic compounds 2,3-dioxygenase-like |automated matches |automated matches |Cupriavidus metallidurans [TaxId: 119219]
 d4o6pc_ :     (THR3)   (ASP72)   [view usage] : e.49.1.1 |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Thermoanaerobacter tengcongensis [TaxId: 273068]
 d3kz1b1 :   (ASN715)  (GLU801)   [view usage] : a.87.1.1 |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |DBL homology domain (DH-domain) |Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF |Human (Homo sapiens) [TaxId: 9606]
 d1jkma_ :   (ASP241)  (ARG295)   [view usage] : c.69.1.2 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carboxylesterase |Carboxylesterase |Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
 d3lj3a3 :   (ASN549)  (SER620)   [view usage] : a.118.1.6 |alpha-alpha superhelix |ARM repeat |Phoshoinositide 3-kinase (PI3K) helical domain |Phoshoinositide 3-kinase (PI3K) helical domain |Human (Homo sapiens) [TaxId: 9606]
 d1re5d_ :    (GLN58)  (HIS143)   [view usage] : a.127.1.1 |L-aspartase-like |L-aspartase-like |L-aspartase/fumarase |3-carboxy-cis,cis-muconate cycloisomerase (CMLE) |Pseudomonas putida, strain KT2440 [TaxId: 303]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.69,   a.118,   a.128,   a.127,    e.22,   d.144,     d.2,   a.266,   a.152,     a.1,    a.87,    e.49,    a.22,    f.58