Tableau information
Concept source: d1occc_ amino acid (a.a.) range (VAL129)(SER261)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(VAL129) (GLY154) H1
(ARG156) (GLU183) H2
(VAL192) (PHE198) H3
(VAL199) (LEU223) H4
(PHE233) (SER261) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -162.3° H2
H3 16.7° -164.8° H3
H4 26.3° -156.0° 10.3° H4
H5 -162.9° 31.0° -159.9° -156.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1h6gb2 : (ILE508) (MSE631) [view usage] : a.24.9.1 |Four-helical up-and-down bundle |alpha-catenin/vinculin-like |alpha-catenin/vinculin |alpha-catenin |Human (Homo sapiens) [TaxId: 9606]
d1vhda_ : (PRO172) (GLY251) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Alcohol dehydrogenase TM0920 |Thermotoga maritima [TaxId: 2336]
d1v54c_ : (VAL129) (SER261) [view usage] : f.25.1.1 |Cytochrome c oxidase subunit III-like |Cytochrome c oxidase subunit III-like |Cytochrome c oxidase subunit III-like |Mitochondrial cytochrome c oxidase, subunit III |Cow (Bos taurus) [TaxId: 9913]
d1wtyc_ : (LEU4) (GLU116) [view usage] : a.24.16.2 |Four-helical up-and-down bundle |Nucleotidyltransferase substrate binding subunit/domain |Family 1 bi-partite nucleotidyltransferase subunit |Probable nucleotidyltransferase subunit TTHA0048 |Thermus thermophilus [TaxId: 274]
d3tz2a1 : (PRO83) (LEU180) [view usage] : a.29.5.0 |Bromodomain-like |alpha-ketoacid dehydrogenase kinase, N-terminal domain |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1hcia3 : (GLU512) (GLN632) [view usage] : a.7.1.1 |Spectrin repeat-like |Spectrin repeat |Spectrin repeat |alpha-actinin |Human (Homo sapiens) [TaxId: 9606]
d1h6ga1 : (ASN398) (ILE505) [view usage] : a.24.9.1 |Four-helical up-and-down bundle |alpha-catenin/vinculin-like |alpha-catenin/vinculin |alpha-catenin |Human (Homo sapiens) [TaxId: 9606]
d2fug11 : (MET337) (HIS416) [view usage] : a.29.12.1 |Bromodomain-like |Nqo1C-terminal domain-like |Nqo1C-terminal domain-like |NADH-quinone oxidoreductase chain 1, Nqo1 |Thermus thermophilus [TaxId: 274]
d3l8ra_ : (THR3) (LYS102) [view usage] : a.7.2.0 |Spectrin repeat-like |Enzyme IIa from lactose specific PTS, IIa-lac |automated matches |automated matches |Streptococcus mutans [TaxId: 1309]
d3qbka_ : (TRP121) (LEU231) [view usage] : f.13.1.0 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |automated matches |automated matches |Natronomonas pharaonis [TaxId: 2257]
d1occc_ : (VAL129) (SER261) [view usage] : f.25.1.1 |Cytochrome c oxidase subunit III-like |Cytochrome c oxidase subunit III-like |Cytochrome c oxidase subunit III-like |Mitochondrial cytochrome c oxidase, subunit III |Cow (Bos taurus) [TaxId: 9913]
d1qq3a_ : (ASP2) (HIS102) [view usage] : a.24.3.1 |Four-helical up-and-down bundle |Cytochromes |Cytochrome b562 |Cytochrome b562 |Escherichia coli [TaxId: 562]
d3l1ma_ : (GLU4) (GLN93) [view usage] : a.24.3.1 |Four-helical up-and-down bundle |Cytochromes |Cytochrome b562 |automated matches |Escherichia coli [TaxId: 562]
d2huja1 : (LEU3) (SER120) [view usage] : a.24.26.1 |Four-helical up-and-down bundle |YppE-like |YppE-like |Hypothetical protein Lin2004 |Listeria innocua [TaxId: 1642]
d1rkea1 : (THR6) (GLU128) [view usage] : a.24.9.1 |Four-helical up-and-down bundle |alpha-catenin/vinculin-like |alpha-catenin/vinculin |Vinculin |Human (Homo sapiens) [TaxId: 9606]
d3a7kb_ : (TRP121) (LEU231) [view usage] : f.13.1.0 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |automated matches |automated matches |Natronomonas pharaonis [TaxId: 348780]
d3no6d_ : (ILE114) (ASN218) [view usage] : a.132.1.0 |Heme oxygenase-like |Heme oxygenase-like |automated matches |automated matches |Staphylococcus epidermidis [TaxId: 176280]
d1oj7a_ : (PRO177) (GLN250) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Hypothetical oxidoreductase yqhD |Escherichia coli [TaxId: 562]
d1l7cb1 : (ASN398) (ASP504) [view usage] : a.24.9.1 |Four-helical up-and-down bundle |alpha-catenin/vinculin-like |alpha-catenin/vinculin |alpha-catenin |Mouse (Mus musculus) [TaxId: 10090]
d3abwa_ : (TRP121) (LEU231) [view usage] : f.13.1.0 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |automated matches |automated matches |Natronomonas pharaonis [TaxId: 348780]
d1x8za_ : (ASN29) (LEU146) [view usage] : a.29.6.1 |Bromodomain-like |Plant invertase/pectin methylesterase inhibitor |Plant invertase/pectin methylesterase inhibitor |Pectin methylesterase inhibitor 1, PMEI1 |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1fftc_ : (GLU65) (ALA203) [view usage] : f.25.1.1 |Cytochrome c oxidase subunit III-like |Cytochrome c oxidase subunit III-like |Cytochrome c oxidase subunit III-like |Cytochrome O ubiquinol oxidase, subunit III |Escherichia coli [TaxId: 562]
d2im8a_ : (SER3) (ARG123) [view usage] : a.24.26.1 |Four-helical up-and-down bundle |YppE-like |YppE-like |Hypothetical protein YppE |Bacillus subtilis [TaxId: 1423]
d2fzfa1 : (ILE13) (LEU162) [view usage] : a.25.1.1 |Ferritin-like |Ferritin-like |Ferritin |Hypothetical protein PF1190 |Pyrococcus furiosus [TaxId: 2261]
d1nu9c1 : (ASN13) (HIS143) [view usage] : a.8.6.1 |immunoglobulin/albumin-binding domain-like |Staphylocoagulase |Staphylocoagulase |Staphylocoagulase |Staphylococcus aureus [TaxId: 1280]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.22, a.132, a.25, f.13, a.29, a.24, a.8, a.7, f.25