Tableau information
Concept source: d3dvaa_ amino acid (a.a.) range (GLU285)(LYS368)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU285) (ASP294) H1
(ARG298) (GLY307) H2
(SER310) (THR335) H3
(THR341) (MET347) H4
(PRO352) (LYS368) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -26.1° H2
H3 113.3° 131.0° H3
H4 64.0° 82.3° 100.7° H4
H5 -95.0° -76.6° -90.8° -158.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1kplb_ : (ARG205) (ILE308) [view usage] : f.20.1.1 |Clc chloride channel |Clc chloride channel |Clc chloride channel |Clc chloride channel |Salmonella typhimurium [TaxId: 90371]
d4kt0b_ : (ASN478) (GLY601) [view usage] : f.29.1.1 |Photosystem I subunits PsaA/PsaB |Photosystem I subunits PsaA/PsaB |Photosystem I subunits PsaA/PsaB |automated matches |Synechocystis sp. [TaxId: 1148]
d4n4ne_ : (ALA323) (MET469) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |automated matches |Nitrosomonas europaea [TaxId: 915]
d2nuud_ : (ASP313) (GLY400) [view usage] : f.44.1.0 |Ammonium transporter |Ammonium transporter |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1qs0a_ : (PHE330) (LEU408) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |2-oxoisovalerate dehydrogenase (E1B), PP module |Pseudomonas putida [TaxId: 303]
d1umbc_ : (PRO284) (LYS364) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |Branched-chain alpha-keto acid dehydrogenase, PP module |Thermus thermophilus [TaxId: 274]
d4v1an_ : (ASN48) (HIS124) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d3puzg_ : (VAL81) (GLY155) [view usage] : f.58.1.1 |MetI-like |MetI-like |MetI-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1w85c_ : (LYS284) (SER367) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |Pyruvate dehydrogenase E1-alpha, PdhA |Bacillus stearothermophilus [TaxId: 1422]
d3jzja_ : (VAL336) (LEU399) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Streptomyces glaucescens [TaxId: 1907]
d1oahb_ : (GLU405) (LEU503) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |Cytochrome c nitrite reductase |Desulfovibrio desulfuricans [TaxId: 876]
d2ns1a_ : (ASP313) (GLY400) [view usage] : f.44.1.0 |Ammonium transporter |Ammonium transporter |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3dvaa_ : (GLU285) (LYS368) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |automated matches |Bacillus stearothermophilus [TaxId: 1422]
d1ivya_ : (THR307) (GLN360) [view usage] : c.69.1.5 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Serine carboxypeptidase-like |Human 'protective protein', HPP |Human (Homo sapiens) [TaxId: 9606]
d2bp7a_ : (ASP326) (GLU407) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |automated matches |Pseudomonas putida [TaxId: 303]
d1s9aa_ : (ASN3) (SER63) [view usage] : b.3.6.1 |Prealbumin-like |Aromatic compound dioxygenase |Aromatic compound dioxygenase |Chlorocatechol 1,2-dioxygenase |Rhodococcus opacus [TaxId: 37919]
d1umba_ : (LYS285) (LEU367) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |Branched-chain alpha-keto acid dehydrogenase, PP module |Thermus thermophilus [TaxId: 274]
d1occd_ : (SER52) (TRP138) [view usage] : f.23.1.1 |Single transmembrane helix |Mitochondrial cytochrome c oxidase subunit IV |Mitochondrial cytochrome c oxidase subunit IV |Mitochondrial cytochrome c oxidase subunit IV |Cow (Bos taurus) [TaxId: 9913]
d1w85g_ : (LYS284) (GLU366) [view usage] : c.36.1.11 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase PP module |Pyruvate dehydrogenase E1-alpha, PdhA |Bacillus stearothermophilus [TaxId: 1422]
d2yhea1 : (LYS410) (GLY459) [view usage] : d.157.1.0 |Metallo-hydrolase/oxidoreductase |Metallo-hydrolase/oxidoreductase |automated matches |automated matches |Pseudomonas sp. [TaxId: 1007495]
d3tnya_ : (LYS227) (VAL281) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Bacillus cereus [TaxId: 1396]
d4fasa_ : (ALA299) (MET445) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |automated matches |Nitrosomonas europaea [TaxId: 228410]
d1kaea_ : (THR13) (LYS103) [view usage] : c.82.1.2 |ALDH-like |ALDH-like |L-histidinol dehydrogenase HisD |L-histidinol dehydrogenase HisD |Escherichia coli [TaxId: 562]
d1wyta1 : (THR7) (THR93) [view usage] : c.67.1.7 |PLP-dependent transferase-like |PLP-dependent transferases |Glycine dehydrogenase subunits (GDC-P) |Glycine dehydrogenase (decarboxylating) subunit 1 |Thermus thermophilus [TaxId: 274]
d2nuua_ : (ASP313) (GLY400) [view usage] : f.44.1.0 |Ammonium transporter |Ammonium transporter |automated matches |automated matches |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67, c.69, c.94, i.1, c.82, c.92, d.157, f.20, c.36, a.138, b.3, f.58, f.29, f.44, f.23