Tableau information
Concept source: d1f1fa_ amino acid (a.a.) range (ASP2)(LYS87)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP2) (ASN13) H1
(CYS14) (HIS18) H2
(SER32) (LYS38) H3
(ASP46) (ASN57) H4
(SER70) (LYS87) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -79.9° H2
H3 81.7° 103.2° H3
H4 29.9° 109.8° 75.4° H4
H5 -95.1° -20.0° -118.5° 124.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1qksa1 : (SER50) (LEU129) [view usage] : a.3.1.2 |Cytochrome c |Cytochrome c |N-terminal (heme c) domain of cytochrome cd1-nitrite reductase |N-terminal (heme c) domain of cytochrome cd1-nitrite reductase |Paracoccus denitrificans [TaxId: 266]
d1hj5a1 : (SER50) (LEU129) [view usage] : a.3.1.2 |Cytochrome c |Cytochrome c |N-terminal (heme c) domain of cytochrome cd1-nitrite reductase |N-terminal (heme c) domain of cytochrome cd1-nitrite reductase |Paracoccus pantotrophus [TaxId: 82367]
d2v07a_ : (ILE5) (GLY98) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1gdva_ : (ALA1) (GLY84) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c6 (synonym: cytochrome c553) |Red alga (Porphyra yezoensis) [TaxId: 2788]
d4eiea_ : (GLN5) (ASP84) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Synechococcus sp. [TaxId: 32049]
d3dp5a_ : (GLY27) (VAL100) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Geobacter sulfurreducens [TaxId: 35554]
d3cu4a_ : (GLY27) (PRO104) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Geobacter sulfurreducens [TaxId: 35554]
d2b10b1 : (SER2) (GLU103) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Mitochondrial cytochrome c |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ls9a_ : (ALA3) (SER89) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c6 (synonym: cytochrome c553) |Green alga (Cladophora glomerata) [TaxId: 162068]
d1kv9a1 : (ALA576) (HIS664) [view usage] : a.3.1.6 |Cytochrome c |Cytochrome c |Quinoprotein alcohol dehydrogenase, C-terminal domain |Quinoprotein alcohol dehydrogenase, C-terminal domain |Pseudomonas putida, hk5 [TaxId: 303]
d2pywa_ : (HIS240) (VAL368) [view usage] : d.144.1.0 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1c6oa_ : (LEU4) (ASP69) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c6 (synonym: cytochrome c553) |Green alga (Scenedesmus obliquus) [TaxId: 3088]
d1b7va_ : (ALA24) (LYS91) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c6 (synonym: cytochrome c553) |Bacillus pasteurii [TaxId: 1474]
d1kiba_ : (ASP2) (GLY88) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c6 (synonym: cytochrome c553) |Arthrospira maxima [TaxId: 129910]
d1a2sa_ : (ASP3) (GLY86) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c6 (synonym: cytochrome c553) |Monoraphidium braunii [TaxId: 34112]
d4eifa_ : (GLN5) (ASP84) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Synechococcus sp. [TaxId: 32049]
d1f1fa_ : (ASP2) (LYS87) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c6 (synonym: cytochrome c553) |Arthrospira maxima [TaxId: 129910]
d2l3xa_ : (PRO6) (LEU65) [view usage] : a.14.1.0 |VHP, Villin headpiece domain |VHP, Villin headpiece domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3o5cb2 : (SER189) (THR304) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Shewanella oneidensis [TaxId: 70863]
d2dgea_ : (LEU73) (GLY168) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1c7ma_ : (ASP3) (GLN100) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c552 |Paracoccus denitrificans [TaxId: 266]
d2zboa_ : (ASP26) (LYS107) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |automated matches |Hizikia fusiformis [TaxId: 74103]
d1cyia_ : (ASP2) (ALA86) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c6 (synonym: cytochrome c553) |Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
d1c6sa_ : (LEU3) (GLY84) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Cytochrome c6 (synonym: cytochrome c553) |Synechococcus elongatus [TaxId: 32046]
d1kx2a_ : (ASP2) (SER75) [view usage] : a.3.1.1 |Cytochrome c |Cytochrome c |monodomain cytochrome c |Mono-heme c-type cytochrome ScyA |Shewanella putrefaciens [TaxId: 24]
d2d0wa_ : (VAL44) (ILE125) [view usage] : a.3.1.0 |Cytochrome c |Cytochrome c |automated matches |automated matches |Hyphomicrobium denitrificans [TaxId: 53399]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
d.144, a.3, a.14