Tableau information
Concept source: d2avub_ amino acid (a.a.) range (THR3)(THR79)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR3) (ASP28) H1
(LYS29) (ARG35) H2
(ASN39) (LEU49) H3
(THR50) (THR60) H4
(GLN73) (THR79) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 143.3° H2
H3 -110.9° 103.0° H3
H4 139.5° -7.2° -108.5° H4
H5 78.4° -96.9° -76.1° -102.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2p6tf1 : (LYS8) (ASN65) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Neisseria meningitidis [TaxId: 122586]
d2cfxa1 : (GLN5) (GLY62) [view usage] : a.4.5.32 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Lrp/AsnC-like transcriptional regulator N-terminal domain |Transcriptional regulator LrpC |Bacillus subtilis [TaxId: 1423]
d4es4d_ : (SER4) (GLN80) [view usage] : a.145.1.1 |Flagellar transcriptional activator FlhD |Flagellar transcriptional activator FlhD |Flagellar transcriptional activator FlhD |Flagellar transcriptional activator FlhD |Escherichia coli [TaxId: 562]
d1g8ea_ : (SER4) (LEU78) [view usage] : a.145.1.1 |Flagellar transcriptional activator FlhD |Flagellar transcriptional activator FlhD |Flagellar transcriptional activator FlhD |Flagellar transcriptional activator FlhD |Escherichia coli [TaxId: 562]
d2p5va1 : (ASP7) (ASN65) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Neisseria meningitidis [TaxId: 122586]
d2p5vg1 : (LYS8) (ASN65) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Neisseria meningitidis [TaxId: 122586]
d3h90a1 : (SER10) (GLY115) [view usage] : f.59.1.1 |Cation efflux protein transmembrane domain-like |Cation efflux protein transmembrane domain-like |Cation efflux protein transmembrane domain-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4a17m_ : (LYS207) (TYR278) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d2avub_ : (THR3) (THR79) [view usage] : a.145.1.1 |Flagellar transcriptional activator FlhD |Flagellar transcriptional activator FlhD |Flagellar transcriptional activator FlhD |Flagellar transcriptional activator FlhD |Escherichia coli [TaxId: 562]
d1xwrb_ : (ALA4) (LEU78) [view usage] : a.35.1.9 |lambda repressor-like DNA-binding domains |lambda repressor-like DNA-binding domains |Bacteriophage CII protein |Regulatory protein cII |Bacteriophage lambda [TaxId: 10710]
d1ul1z1 : (ASN219) (GLU295) [view usage] : a.60.7.1 |SAM domain-like |5' to 3' exonuclease, C-terminal subdomain |5' to 3' exonuclease, C-terminal subdomain |Flap endonuclease-1 (Fen-1 nuclease) |Human (Homo sapiens) [TaxId: 9606]
d1lcaa_ : (ASP83) (HIS174) [view usage] : d.117.1.1 |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase/dCMP hydroxymethylase |Thymidylate synthase |Lactobacillus casei [TaxId: 1582]
d1g8eb_ : (LEU6) (LEU78) [view usage] : a.145.1.1 |Flagellar transcriptional activator FlhD |Flagellar transcriptional activator FlhD |Flagellar transcriptional activator FlhD |Flagellar transcriptional activator FlhD |Escherichia coli [TaxId: 562]
d2avua_ : (SER4) (LEU78) [view usage] : a.145.1.1 |Flagellar transcriptional activator FlhD |Flagellar transcriptional activator FlhD |Flagellar transcriptional activator FlhD |Flagellar transcriptional activator FlhD |Escherichia coli [TaxId: 562]
d4es4b_ : (SER4) (GLN80) [view usage] : a.145.1.1 |Flagellar transcriptional activator FlhD |Flagellar transcriptional activator FlhD |Flagellar transcriptional activator FlhD |Flagellar transcriptional activator FlhD |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
i.1, d.117, a.4, a.60, a.35, a.145, f.59