Tableau information
Concept source: d3dbyd1 amino acid (a.a.) range (TYR6)(GLY121)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR6) (LEU32) H1
(LYS37) (GLU48) H2
(PHE50) (LYS56) H3
(ASN61) (GLU89) H4
(PRO98) (GLY121) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -156.1° H2
H3 -158.5° 2.5° H3
H4 28.9° -158.5° -158.1° H4
H5 -153.0° 35.7° 34.8° -160.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2bl8b_ : (ASN4) (GLY84) [view usage] : a.29.8.2 |Bromodomain-like |Bacteriocin immunity protein-like |EntA-Im |automated matches |Enterococcus faecium [TaxId: 1352]
d1rrma_ : (PRO186) (PHE272) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Lactaldehyde reductase FucO |Escherichia coli [TaxId: 562]
d1v54a_ : (GLN52) (GLY205) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Mitochondrial cytochrome c oxidase, subunit I |Cow (Bos taurus) [TaxId: 9913]
d1v54a_ : (HIS378) (GLY497) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Mitochondrial cytochrome c oxidase, subunit I |Cow (Bos taurus) [TaxId: 9913]
d3tj5a2 : (ALA129) (LEU250) [view usage] : a.24.9.1 |Four-helical up-and-down bundle |alpha-catenin/vinculin-like |alpha-catenin/vinculin |Vinculin |Human (Homo sapiens) [TaxId: 9606]
d3hx2b_ : (THR11) (LEU162) [view usage] : a.25.1.1 |Ferritin-like |Ferritin-like |Ferritin |(Apo)ferritin |Human (Homo sapiens) [TaxId: 9606]
d1l7cc1 : (VAL399) (SER507) [view usage] : a.24.9.1 |Four-helical up-and-down bundle |alpha-catenin/vinculin-like |alpha-catenin/vinculin |alpha-catenin |Mouse (Mus musculus) [TaxId: 10090]
d3hasa_ : (TYR79) (THR178) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |automated matches |Halobacterium salinarum [TaxId: 2242]
d2z55a_ : (THR94) (GLY197) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |automated matches |Halobacterium sp. [TaxId: 29285]
d1rrmb_ : (PRO186) (PHE272) [view usage] : e.22.1.2 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |Iron-containing alcohol dehydrogenase |Lactaldehyde reductase FucO |Escherichia coli [TaxId: 562]
d3dbya1 : (ASN5) (GLY121) [view usage] : a.29.13.1 |Bromodomain-like |Bacillus cereus metalloprotein-like |Bacillus cereus metalloprotein-like |Uncharacterized protein BCE_G9241_0798 |Bacillus cereus [TaxId: 1396]
d1occa_ : (PHE63) (ASN216) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Mitochondrial cytochrome c oxidase, subunit I |Cow (Bos taurus) [TaxId: 9913]
d2etsa1 : (MSE1) (THR110) [view usage] : a.24.26.1 |Four-helical up-and-down bundle |YppE-like |YppE-like |Hypothetical protein MW1337 |Staphylococcus aureus [TaxId: 1280]
d2gdca2 : (ALA129) (LEU250) [view usage] : a.24.9.1 |Four-helical up-and-down bundle |alpha-catenin/vinculin-like |alpha-catenin/vinculin |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1v74b_ : (MET4) (TYR67) [view usage] : a.24.20.1 |Four-helical up-and-down bundle |Colicin D immunity protein |Colicin D immunity protein |Colicin D immunity protein |Escherichia coli [TaxId: 562]
d1tfkb_ : (ALA5) (LYS86) [view usage] : a.24.20.1 |Four-helical up-and-down bundle |Colicin D immunity protein |Colicin D immunity protein |automated matches |Escherichia coli [TaxId: 562]
d3s90b2 : (ALA129) (LYS236) [view usage] : a.24.9.1 |Four-helical up-and-down bundle |alpha-catenin/vinculin-like |alpha-catenin/vinculin |Vinculin |Human (Homo sapiens) [TaxId: 9606]
d3owod_ : (PRO184) (ASN274) [view usage] : e.22.1.0 |Dehydroquinate synthase-like |Dehydroquinate synthase-like |automated matches |automated matches |Zymomonas mobilis [TaxId: 542]
d3a7ka_ : (TRP121) (GLY206) [view usage] : f.13.1.0 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |automated matches |automated matches |Natronomonas pharaonis [TaxId: 348780]
d3weia_ : (SER37) (ASN99) [view usage] : a.128.1.2 |Terpenoid synthases |Terpenoid synthases |Squalene synthase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2gsmc_ : (VAL273) (SER402) [view usage] : f.24.1.1 |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Cytochrome c oxidase subunit I-like |Bacterial aa3 type cytochrome c oxidase subunit I |Rhodobacter sphaeroides [TaxId: 1063]
d1e3ma1 : (ASP317) (LYS396) [view usage] : a.113.1.1 |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |DNA repair protein MutS, domain III |Escherichia coli [TaxId: 562]
d3hx5x_ : (SER10) (LEU162) [view usage] : a.25.1.1 |Ferritin-like |Ferritin-like |Ferritin |(Apo)ferritin |Human (Homo sapiens) [TaxId: 9606]
d3hx2q_ : (SER10) (LEU162) [view usage] : a.25.1.1 |Ferritin-like |Ferritin-like |Ferritin |(Apo)ferritin |Human (Homo sapiens) [TaxId: 9606]
d3s90a2 : (ALA129) (LEU250) [view usage] : a.24.9.1 |Four-helical up-and-down bundle |alpha-catenin/vinculin-like |alpha-catenin/vinculin |Vinculin |Human (Homo sapiens) [TaxId: 9606]
d3dbyd1 : (TYR6) (GLY121) [view usage] : a.29.13.1 |Bromodomain-like |Bacillus cereus metalloprotein-like |Bacillus cereus metalloprotein-like |Uncharacterized protein BCE_G9241_0798 |Bacillus cereus [TaxId: 1396]
d2bl7a1 : (ASN4) (SER81) [view usage] : a.29.8.2 |Bromodomain-like |Bacteriocin immunity protein-like |EntA-Im |Enterocine A immunity protein, EntA-Im |Enterococcus faecium [TaxId: 1352]
d1rkca2 : (ALA129) (SER252) [view usage] : a.24.9.1 |Four-helical up-and-down bundle |alpha-catenin/vinculin-like |alpha-catenin/vinculin |Vinculin |Human (Homo sapiens) [TaxId: 9606]
d3hx5a_ : (THR11) (LEU162) [view usage] : a.25.1.1 |Ferritin-like |Ferritin-like |Ferritin |(Apo)ferritin |Human (Homo sapiens) [TaxId: 9606]
d3iqcb_ : (ALA21) (ILE120) [view usage] : a.24.19.0 |Four-helical up-and-down bundle |Flagellar export chaperone FliS |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
d1xwma_ : (THR4) (ARG139) [view usage] : a.7.12.1 |Spectrin repeat-like |PhoU-like |PhoU-like |Phosphate transport system protein PhoU |Bacillus stearothermophilus [TaxId: 1422]
d3abwb_ : (TRP121) (GLY206) [view usage] : f.13.1.0 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |automated matches |automated matches |Natronomonas pharaonis [TaxId: 348780]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
a.128, e.22, a.25, f.24, f.13, a.29, a.24, a.7, a.113