Tableau information
Concept source: d1pdua_ amino acid (a.a.) range (GLU473)(THR548)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU473) (ASN495) H1
(ASN495) (LYS500) H2
(TYR504) (GLY510) H3
(LEU512) (GLU532) H4
(PRO538) (THR548) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -84.9° H2
H3 138.2° 91.0° H3
H4 124.8° 93.8° -13.9° H4
H5 -98.5° -47.3° -108.9° -120.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1m2pa_ : (PRO280) (GLU331) [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Protein kinase CK2, alpha subunit |Maize (Zea mays) [TaxId: 4577]
d3dxjf3 : (GLY378) (LEU422) [view usage] : a.4.13.0 |DNA/RNA-binding 3-helical bundle |Sigma3 and sigma4 domains of RNA polymerase sigma factors |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1k3ca1 : (ASP490) (GLY537) [view usage] : c.91.1.1 |PEP carboxykinase-like |PEP carboxykinase-like |PEP carboxykinase C-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
d1kkqa_ : (GLY395) (MET467) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Peroxisome proliferator activated receptor alpha, PPAR-alpha |Human (Homo sapiens) [TaxId: 9606]
d1nxea_ : (PRO130) (ALA227) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Escherichia coli [TaxId: 562]
d1ofwa_ : (ASN46) (VAL118) [view usage] : a.138.1.1 |Multiheme cytochromes |Multiheme cytochromes |Cytochrome c3-like |Nine-heme cytochrome c |Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]
d3kw4a_ : (THR230) (GLY333) [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Mammalian cytochrome p450 2b4 |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d3okia_ : (GLU413) (ILE472) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3lbda_ : (PRO347) (LEU416) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Retinoic acid receptor gamma (RAR-gamma) |Human (Homo sapiens) [TaxId: 9606]
d3snga_ : (GLU29) (HIS85) [view usage] : a.124.1.0 |Phospholipase C/P1 nuclease |Phospholipase C/P1 nuclease |automated matches |automated matches |Solanum lycopersicum [TaxId: 4081]
d2yfwf_ : (ASP24) (GLN93) [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Kluyveromyces lactis [TaxId: 284590]
d1d4cc1 : (LEU5) (CYS87) [view usage] : a.138.1.3 |Multiheme cytochromes |Multiheme cytochromes |Di-heme elbow motif |Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain |Shewanella putrefaciens [TaxId: 24]
d3nsqb_ : (PRO386) (LYS440) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Retinoid-X receptor alpha (RXR-alpha) |Human (Homo sapiens) [TaxId: 9606]
d2r1ra1 : (ALA101) (GLY153) [view usage] : a.98.1.1 |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |R1 subunit of ribonucleotide reductase, N-terminal domain |Escherichia coli [TaxId: 562]
d1tfcb_ : (ASP384) (ALA456) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Orphan nuclear receptor ERR3 |Human (Homo sapiens) [TaxId: 9606]
d1lj8a3 : (ILE444) (LYS491) [view usage] : a.100.1.9 |6-phosphogluconate dehydrogenase C-terminal domain-like |6-phosphogluconate dehydrogenase C-terminal domain-like |Mannitol 2-dehydrogenase |Mannitol 2-dehydrogenase |Pseudomonas fluorescens [TaxId: 294]
d1mn8c_ : (THR7) (SER70) [view usage] : a.61.1.6 |Retroviral matrix proteins |Retroviral matrix proteins |MMLV matrix protein-like |MMLV matrix protein |Moloney murine leukemia virus, MoMLV [TaxId: 11801]
d1yuca_ : (GLN476) (ALA538) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3azeb_ : (ASN25) (GLY94) [view usage] : a.22.1.1 |Histone-fold |Histone-fold |Nucleosome core histones |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1z8ha_ : (GLU166) (ARG206) [view usage] : c.23.10.6 |Flavodoxin-like |SGNH hydrolase |Hypothetical protein alr1529 |Hypothetical protein alr1529 |Nostoc sp. PCC 7120 [TaxId: 103690]
d2fdub_ : (ASP266) (GLY336) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3p4ia2 : (ASP236) (GLY310) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Mycobacterium avium [TaxId: 1764]
d2li6a_ : (ASP65) (LYS115) [view usage] : a.4.3.1 |DNA/RNA-binding 3-helical bundle |ARID-like |ARID domain |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]
d1pdua_ : (GLU473) (THR548) [view usage] : a.123.1.1 |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear receptor ligand-binding domain |Nuclear hormone receptor HR38 |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d2nllb_ : (GLU321) (GLU401) [view usage] : g.39.1.2 |Glucocorticoid receptor-like (DNA-binding domain) |Glucocorticoid receptor-like (DNA-binding domain) |Nuclear receptor |Thyroid hormone receptor (TR-beta) DNA-binding domain |Human (Homo sapiens) [TaxId: 9606]
d1al6a_ : (HIS136) (SER236) [view usage] : a.103.1.1 |Citrate synthase |Citrate synthase |Citrate synthase |Citrate synthase |Chicken (Gallus gallus) [TaxId: 9031]
d1qz4a_ : (SER154) (LEU213) [view usage] : a.198.1.1 |YcfC-like |YcfC-like |YcfC-like |Hypothetical protein YcfC |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
a.104, c.23, d.144, c.55, a.103, a.123, a.100, a.4, a.138, c.91, a.124, a.61, a.22, a.198, a.98, g.39