Tableau information
Concept source: d2qkqa_ amino acid (a.a.) range (SER911)(GLN966)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER911) (LYS920) H1
(TYR924) (GLY932) H2
(PHE936) (ILE942) H3
(GLU945) (GLY951) H4
(ALA955) (GLN966) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 149.5° H2
H3 -44.8° 105.5° H3
H4 -93.0° 106.2° -109.2° H4
H5 120.3° -64.7° -121.9° 128.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2f44a_ : (SER6) (GLN64) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |Sh3 and multiple ankyrin repeat domains 3 (Shank3) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2f3nc_ : (PHE8) (ARG63) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |Sh3 and multiple ankyrin repeat domains 3 (Shank3) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1b4fg_ : (VAL14) (ASN75) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |EphB2 receptor |Human (Homo sapiens) [TaxId: 9606]
d1x2ia1 : (THR4) (ILE63) [view usage] : a.60.2.5 |SAM domain-like |RuvA domain 2-like |Hef domain-like |ATP-dependent RNA helicase PF2015 |Pyrococcus furiosus [TaxId: 2261]
d2csda2 : (ILE294) (SER348) [view usage] : a.60.2.4 |SAM domain-like |RuvA domain 2-like |Topoisomerase V repeat domain |Topoisomerase V |Methanopyrus kandleri [TaxId: 2320]
d1koya_ : (ILE241) (GLN299) [view usage] : a.164.1.1 |C-terminal domain of DFF45/ICAD (DFF-C domain) |C-terminal domain of DFF45/ICAD (DFF-C domain) |C-terminal domain of DFF45/ICAD (DFF-C domain) |C-terminal domain of DFF45/ICAD (DFF-C domain) |Human (Homo sapiens) [TaxId: 9606]
d2kn7a_ : (GLY15) (HIS70) [view usage] : a.60.2.5 |SAM domain-like |RuvA domain 2-like |Hef domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3bq7a_ : (GLY6) (ARG67) [view usage] : a.60.1.0 |SAM domain-like |SAM/Pointed domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1pk1c_ : (SER18) (ILE78) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |Polyhomeotic |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d4pzne_ : (THR920) (SER979) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1b4fh_ : (THR13) (SER79) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |EphB2 receptor |Human (Homo sapiens) [TaxId: 9606]
d1f0ma_ : (THR13) (GLN78) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |EphB2 receptor |Human (Homo sapiens) [TaxId: 9606]
d4pzna_ : (THR920) (GLU982) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ixra1 : (ASP64) (LYS128) [view usage] : a.60.2.1 |SAM domain-like |RuvA domain 2-like |DNA helicase RuvA subunit, middle domain |DNA helicase RuvA subunit, middle domain |Thermus thermophilus [TaxId: 274]
d1z00a1 : (LEU223) (LEU289) [view usage] : a.60.2.5 |SAM domain-like |RuvA domain 2-like |Hef domain-like |DNA excision repair protein ERCC-1 |Human (Homo sapiens) [TaxId: 9606]
d2k4pa_ : (MET29) (LYS86) [view usage] : a.60.1.0 |SAM domain-like |SAM/Pointed domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4is7a1 : (ASP23) (LEU82) [view usage] : a.60.1.0 |SAM domain-like |SAM/Pointed domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2csba2 : (ILE294) (SER348) [view usage] : a.60.2.4 |SAM domain-like |RuvA domain 2-like |Topoisomerase V repeat domain |Topoisomerase V |Methanopyrus kandleri [TaxId: 2320]
d1b4ff_ : (THR13) (GLU81) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |EphB2 receptor |Human (Homo sapiens) [TaxId: 9606]
d3sena1 : (LYS8) (LEU68) [view usage] : a.60.1.0 |SAM domain-like |SAM/Pointed domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4pznb_ : (THR920) (GLU982) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1d8la1 : (LYS66) (LEU135) [view usage] : a.60.2.1 |SAM domain-like |RuvA domain 2-like |DNA helicase RuvA subunit, middle domain |DNA helicase RuvA subunit, middle domain |Escherichia coli [TaxId: 562]
d1wwva1 : (THR15) (LEU77) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |Connector enhancer of kinase suppressor of Ras 1, CNK1 |Human (Homo sapiens) [TaxId: 9606]
d3bq7d_ : (GLY6) (ARG67) [view usage] : a.60.1.0 |SAM domain-like |SAM/Pointed domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ksob_ : (MET29) (LYS86) [view usage] : a.60.1.0 |SAM domain-like |SAM/Pointed domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2a1jb1 : (ASP221) (HIS290) [view usage] : a.60.2.5 |SAM domain-like |RuvA domain 2-like |Hef domain-like |DNA excision repair protein ERCC-1 |Human (Homo sapiens) [TaxId: 9606]
d2f3na1 : (SER6) (LEU65) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |Sh3 and multiple ankyrin repeat domains 3 (Shank3) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1v9pa1 : (GLY505) (ASP564) [view usage] : a.60.2.2 |SAM domain-like |RuvA domain 2-like |NAD+-dependent DNA ligase, domain 3 |NAD+-dependent DNA ligase, domain 3 |Thermus filiformis [TaxId: 276]
d1wcla_ : (GLU351) (GLU422) [view usage] : a.60.4.2 |SAM domain-like |Rad51 N-terminal domain-like |NusA extra C-terminal domains |automated matches |Escherichia coli [TaxId: 562]
d1oxja1 : (ILE601) (GLU655) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |RNA-binding protein Smaug |Fruit fly (Drosophila melanogaster) [TaxId: 7227]
d3ldaa1 : (PRO82) (LEU139) [view usage] : a.60.4.1 |SAM domain-like |Rad51 N-terminal domain-like |DNA repair protein Rad51, N-terminal domain |DNA repair protein Rad51, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1dgsa1 : (GLY502) (ASP561) [view usage] : a.60.2.2 |SAM domain-like |RuvA domain 2-like |NAD+-dependent DNA ligase, domain 3 |NAD+-dependent DNA ligase, domain 3 |Thermus filiformis [TaxId: 276]
d1iyra_ : (ALA18) (GLN81) [view usage] : a.164.1.1 |C-terminal domain of DFF45/ICAD (DFF-C domain) |C-terminal domain of DFF45/ICAD (DFF-C domain) |C-terminal domain of DFF45/ICAD (DFF-C domain) |C-terminal domain of DFF45/ICAD (DFF-C domain) |Human (Homo sapiens) [TaxId: 9606]
d3bq7c_ : (GLY6) (ARG67) [view usage] : a.60.1.0 |SAM domain-like |SAM/Pointed domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2d8ca1 : (SER21) (GLU83) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |Sphingomyelin synthase 1, SMS1 |Mouse (Mus musculus) [TaxId: 10090]
d2q0zx1 : (SER151) (TYR207) [view usage] : a.289.1.1 |Sec63 N-terminal domain-like |Sec63 N-terminal domain-like |Sec63 N-terminal domain |Protein pro2281 |Human (Homo sapiens) [TaxId: 9606]
d1b4fd_ : (VAL14) (SER79) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |EphB2 receptor |Human (Homo sapiens) [TaxId: 9606]
d1uqva_ : (SER36) (SER102) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |Ste50p, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1ow5a_ : (PRO23) (PHE81) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |Serine/threonine-protein kinase ste11 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3bq7b_ : (GLY6) (SER66) [view usage] : a.60.1.0 |SAM domain-like |SAM/Pointed domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ixrb2 : (GLU65) (LYS128) [view usage] : a.60.2.1 |SAM domain-like |RuvA domain 2-like |DNA helicase RuvA subunit, middle domain |DNA helicase RuvA subunit, middle domain |Thermus thermophilus [TaxId: 274]
d1u9lb_ : (ALA352) (LEU406) [view usage] : a.60.4.2 |SAM domain-like |Rad51 N-terminal domain-like |NusA extra C-terminal domains |Transcription elongation protein NusA |Escherichia coli [TaxId: 562]
d1b4fb_ : (THR13) (GLN78) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |EphB2 receptor |Human (Homo sapiens) [TaxId: 9606]
d3seia1 : (THR1) (LEU65) [view usage] : a.60.1.0 |SAM domain-like |SAM/Pointed domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1z1va_ : (VAL37) (SER102) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |Ste50p, N-terminal domain |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1b4fa_ : (THR13) (SER79) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |EphB2 receptor |Human (Homo sapiens) [TaxId: 9606]
d1sxea_ : (SER135) (GLU197) [view usage] : a.60.1.1 |SAM domain-like |SAM/Pointed domain |Pointed domain |Transcriptional regulator ERG |Human (Homo sapiens) [TaxId: 9606]
d2qkqa_ : (SER911) (GLN966) [view usage] : a.60.1.2 |SAM domain-like |SAM/Pointed domain |SAM (sterile alpha motif) domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
a.60, a.289, a.164