Tableau information
Concept source: d1kpsd_ amino acid (a.a.) range (PRO468)(LYS567)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO468) (PHE482) H1
(ALA486) (CYS506) H2
(ASN510) (GLY523) H3
(HIS538) (GLN550) H4
(ALA558) (LYS567) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -168.0° H2
H3 -48.5° 138.5° H3
H4 114.3° -56.3° -159.6° H4
H5 -52.0° 132.0° -12.7° -151.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2jbwd_ : (ASN15) (LEU109) [view usage] : c.69.1.41 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |2,6-dihydropseudooxynicotine hydrolase-like |2,6-dihydropseudooxynicotine hydrolase |Arthrobacter nicotinovorans [TaxId: 29320]
d2jyga_ : (SER149) (VAL221) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |HIV capsid protein, dimerisation domain |Human immunodeficiency virus type 1 [TaxId: 11676]
d3crda_ : (VAL26) (GLU92) [view usage] : a.77.1.3 |DEATH domain |DEATH domain |Caspase recruitment domain, CARD |Raidd CARD domain |Human (Homo sapiens) [TaxId: 9606]
d2grnb1 : (PRO466) (LYS565) [view usage] : a.118.12.1 |alpha-alpha superhelix |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1kpsd_ : (PRO468) (LYS567) [view usage] : a.118.12.1 |alpha-alpha superhelix |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Mouse (Mus musculus) [TaxId: 10090]
d2btda_ : (ASP60) (MET172) [view usage] : a.208.1.0 |DhaL-like |DhaL-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1kbua1 : (ASP21) (GLY128) [view usage] : a.60.9.1 |SAM domain-like |lambda integrase-like, N-terminal domain |lambda integrase-like, N-terminal domain |Cre recombinase |Bacteriophage P1 [TaxId: 10678]
d1ciia1 : (LEU548) (PHE623) [view usage] : f.1.1.1 |Toxins' membrane translocation domains |Colicin |Colicin |Colicin Ia |Escherichia coli [TaxId: 562]
d1mhyd_ : (PHE266) (GLY394) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase alpha subunit |Methylosinus trichosporium [TaxId: 426]
d1ug3b1 : (SER1234) (GLU1331) [view usage] : a.118.1.14 |alpha-alpha superhelix |ARM repeat |MIF4G domain-like |Eukaryotic initiation factor eIF4G |Human (Homo sapiens) [TaxId: 9606]
d2yvya1 : (VAL7) (LEU64) [view usage] : a.118.26.0 |alpha-alpha superhelix |MgtE N-terminal domain-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2ggfa_ : (LYS329) (ASN410) [view usage] : a.118.1.14 |alpha-alpha superhelix |ARM repeat |MIF4G domain-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ldja3 : (SER414) (THR526) [view usage] : e.40.1.1 |Cullin homology domain |Cullin homology domain |Cullin homology domain |Cullin homolog 1, cul-1 |Human (Homo sapiens) [TaxId: 9606]
d3pnlb_ : (ASP60) (MET172) [view usage] : a.208.1.0 |DhaL-like |DhaL-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2jbwc_ : (TRP16) (LEU109) [view usage] : c.69.1.41 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |2,6-dihydropseudooxynicotine hydrolase-like |2,6-dihydropseudooxynicotine hydrolase |Arthrobacter nicotinovorans [TaxId: 29320]
d1om2a_ : (ALA13) (ALA86) [view usage] : a.23.4.1 |Open three-helical up-and-down bundle |Mitochondrial import receptor subunit Tom20 |Mitochondrial import receptor subunit Tom20 |Mitochondrial import receptor subunit Tom20 |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1wq1g_ : (VAL737) (HIS812) [view usage] : a.116.1.2 |GTPase activation domain, GAP |GTPase activation domain, GAP |p120GAP domain-like |p120GAP domain |Human (Homo sapiens) [TaxId: 9606]
d1z5sc1 : (PRO466) (LYS565) [view usage] : a.118.12.1 |alpha-alpha superhelix |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d1z1wa4 : (GLU618) (ALA692) [view usage] : a.118.1.26 |alpha-alpha superhelix |ARM repeat |ERAP1 C-terminal-like |Tricorn protease interacting factor F3 C-terminal domain |Thermoplasma acidophilum [TaxId: 2303]
d3dhza_ : (PHE172) (LYS287) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Ribonucleotide reductase R2 |Corynebacterium ammoniagenes [TaxId: 1697]
d1kbub1 : (SER20) (GLY128) [view usage] : a.60.9.1 |SAM domain-like |lambda integrase-like, N-terminal domain |lambda integrase-like, N-terminal domain |Cre recombinase |Bacteriophage P1 [TaxId: 10678]
d1rh1a2 : (TYR420) (LYS511) [view usage] : f.1.1.1 |Toxins' membrane translocation domains |Colicin |Colicin |Colicin B C-terminal domain |Escherichia coli [TaxId: 562]
d2gtqa4 : (ASN707) (SER782) [view usage] : a.118.1.27 |alpha-alpha superhelix |ARM repeat |Aminopeptidase N (APN) C-terminal-like |Aminopeptidase N (APN) C-terminal domain |Neisseria meningitidis [TaxId: 122586]
d1ug3a1 : (LYS1235) (GLU1331) [view usage] : a.118.1.14 |alpha-alpha superhelix |ARM repeat |MIF4G domain-like |Eukaryotic initiation factor eIF4G |Human (Homo sapiens) [TaxId: 9606]
d4a64a_ : (GLY442) (PHE533) [view usage] : a.118.17.0 |alpha-alpha superhelix |Cullin repeat-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2kztb_ : (HIS361) (CYS447) [view usage] : a.118.1.14 |alpha-alpha superhelix |ARM repeat |MIF4G domain-like |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3ds5a_ : (SER149) (CYS218) [view usage] : a.28.3.1 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |Retrovirus capsid protein C-terminal domain |HIV capsid protein, dimerisation domain |Human immunodeficiency virus type 1 [TaxId: 11676]
d2fi2a1 : (GLY39) (ARG124) [view usage] : a.28.3.2 |Acyl carrier protein-like |Retrovirus capsid dimerization domain-like |SCAN domain |Zinc finger protein 42 |Human (Homo sapiens) [TaxId: 9606]
d1a87a_ : (ASP293) (ILE381) [view usage] : f.1.1.1 |Toxins' membrane translocation domains |Colicin |Colicin |Colicin N |Escherichia coli [TaxId: 562]
d2hm8a_ : (HIS326) (GLU411) [view usage] : a.118.1.14 |alpha-alpha superhelix |ARM repeat |MIF4G domain-like |Programmed cell death 4, PDCD4 |Mouse (Mus musculus) [TaxId: 10090]
d1y6ia1 : (MET1) (ASN77) [view usage] : a.118.1.22 |alpha-alpha superhelix |ARM repeat |GUN4-associated domain |Mg-chelatase cofactor Gun4 |Synechocystis sp. PCC 6803 [TaxId: 1148]
d1nfie_ : (THR113) (LYS177) [view usage] : d.211.1.1 |beta-hairpin-alpha-hairpin repeat |Ankyrin repeat |Ankyrin repeat |I-kappa-B-alpha |Human (Homo sapiens) [TaxId: 9606]
d2i6ha1 : (ALA80) (GLY155) [view usage] : a.118.8.5 |alpha-alpha superhelix |TPR-like |Atu0120-like |Hypothetical protein Atu0120 |Agrobacterium tumefaciens [TaxId: 358]
d1h2ub1 : (LYS65) (GLU158) [view usage] : a.118.1.14 |alpha-alpha superhelix |ARM repeat |MIF4G domain-like |CBP80, 80KDa nuclear cap-binding protein |Human (Homo sapiens) [TaxId: 9606]
d1fyza_ : (TYR266) (GLY394) [view usage] : a.25.1.2 |Ferritin-like |Ferritin-like |Ribonucleotide reductase-like |Methane monooxygenase hydrolase alpha subunit |Methylococcus capsulatus [TaxId: 414]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.69, a.118, d.211, a.25, f.1, a.23, a.77, a.116, a.60, a.28, e.40, a.208