Tableau information
Concept source: d3uctb_ amino acid (a.a.) range (THR5)(LYS75)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR5) (ASP20) H1
(THR28) (SER38) H2
(THR44) (GLU54) H3
(GLU54) (GLY59) H4
(PHE65) (LYS75) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 134.2° H2
H3 -92.6° 121.0° H3
H4 -39.5° 157.5° -53.6° H4
H5 131.9° -48.5° 128.8° 153.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2peke_ : (PHE3) (GLN111) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Synechococcus sp. [TaxId: 32049]
d3vlmb2 : (ASP443) (ARG522) [view usage] : a.93.1.0 |Heme-dependent peroxidases |Heme-dependent peroxidases |automated matches |automated matches |Haloarcula marismortui [TaxId: 272569]
d1n81a_ : (GLU91) (ASP192) [view usage] : a.185.1.1 |Gametocyte protein Pfg27 |Gametocyte protein Pfg27 |Gametocyte protein Pfg27 |Gametocyte protein Pfg27 |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d2y5ie_ : (SER3) (SER98) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
d3uctb_ : (THR5) (LYS75) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |Human (Homo sapiens) [TaxId: 9606]
d1wuda1 : (ARG533) (GLY605) [view usage] : a.60.8.1 |SAM domain-like |HRDC-like |HRDC domain from helicases |HRDC domain from RecQ helicase |Escherichia coli [TaxId: 562]
d2py8b_ : (GLN2) (ALA114) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Synechocystis sp. PCC 6803 [TaxId: 1148]
d2y5ia_ : (SER3) (LYS99) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
d1cfpa_ : (SER1) (CYS84) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |Calcyclin (S100) |Cow (Bos taurus), s100b [TaxId: 9913]
d1m31a_ : (PRO4) (CYS86) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |Calcyclin (S100) |Human (Homo sapiens), s100a4 [TaxId: 9606]
d2m46a_ : (THR38) (ASP88) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Staphylococcus aureus [TaxId: 93062]
d1dk1a_ : (LYS104) (LYS183) [view usage] : a.16.1.2 |S15/NS1 RNA-binding domain |S15/NS1 RNA-binding domain |Ribosomal protein S15 |Ribosomal protein S15 |Thermus thermophilus [TaxId: 274]
d2wc8b_ : (THR1) (LYS90) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2c03a1 : (PHE2) (GLY87) [view usage] : a.24.13.0 |Four-helical up-and-down bundle |Domain of the SRP/SRP receptor G-proteins |automated matches |automated matches |Thermus aquaticus [TaxId: 271]
d1ozsa_ : (GLU94) (GLU161) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Troponin C |Human (Homo sapiens), cardiac isoform [TaxId: 9606]
d1eg3a1 : (SER125) (CYS207) [view usage] : a.39.1.7 |EF Hand-like |EF-hand |EF-hand modules in multidomain proteins |Dystrophin |Human (Homo sapiens) [TaxId: 9606]
d2o5ra2 : (MSE391) (SER466) [view usage] : a.97.1.0 |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |An anticodon-binding domain of class I aminoacyl-tRNA synthetases |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d1k8ua_ : (PRO4) (ASN85) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |Calcyclin (S100) |Human (Homo sapiens), s100a6 [TaxId: 9606]
d1wudb_ : (ARG533) (GLY605) [view usage] : a.60.8.1 |SAM domain-like |HRDC-like |HRDC domain from helicases |automated matches |Escherichia coli [TaxId: 562]
d4mtda_ : (THR4) (GLN73) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d2wcfc_ : (THR1) (HIS85) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2y5ib_ : (SER3) (SER98) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
d1bg8a_ : (CYS18) (ILE85) [view usage] : a.57.1.1 |Protein HNS-dependent expression A; HdeA |Protein HNS-dependent expression A; HdeA |Protein HNS-dependent expression A; HdeA |Protein HNS-dependent expression A; HdeA |Escherichia coli [TaxId: 562]
d2kyca_ : (GLN42) (GLN107) [view usage] : a.39.1.4 |EF Hand-like |EF-hand |Parvalbumin |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d1b4ca_ : (LEU3) (HIS85) [view usage] : a.39.1.2 |EF Hand-like |EF-hand |S100 proteins |Calcyclin (S100) |Norway rat (Rattus norvegicus), s100b [TaxId: 10116]
d2jlsa2 : (GLN529) (GLY616) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Dengue virus 4 [TaxId: 408688]
d2jnfa_ : (SER8) (PHE79) [view usage] : a.39.1.0 |EF Hand-like |EF-hand |automated matches |automated matches |Lethocerus indicus [TaxId: 212017]
d3gkxb_ : (VAL40) (ASN89) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacteroides fragilis [TaxId: 272559]
d2pekd_ : (PHE3) (GLU107) [view usage] : a.280.1.1 |RbcX-like |RbcX-like |RbcX-like |RuBisCo chaperone RbcX |Synechococcus sp. [TaxId: 32049]
d2aqea1 : (ASN24) (GLU84) [view usage] : a.4.1.18 |DNA/RNA-binding 3-helical bundle |Homeodomain-like |SWIRM domain |Transcriptional adaptor 2-like, TADA2L |Mouse (Mus musculus) [TaxId: 10090]
d1g03a_ : (SER34) (LEU124) [view usage] : a.73.1.1 |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |Retrovirus capsid protein, N-terminal core domain |HTLV-I capsid protein |Human T-cell leukemia virus type 1 [TaxId: 11908]
d2gz4c_ : (VAL56) (LEU151) [view usage] : a.211.1.1 |HD-domain/PDEase-like |HD-domain/PDEase-like |HD domain |Hypothetical protein Atu1052 |Agrobacterium tumefaciens [TaxId: 358]
d1cfca_ : (SER81) (ALA147) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Calmodulin |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1br1b_ : (SER4) (ASN79) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Myosin Essential Chain |Chicken (Gallus gallus) [TaxId: 9031]
d1br1b_ : (ASP87) (LEU148) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Myosin Essential Chain |Chicken (Gallus gallus) [TaxId: 9031]
d1a2xa_ : (SER12) (ALA87) [view usage] : a.39.1.5 |EF Hand-like |EF-hand |Calmodulin-like |Troponin C |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d3sqgb2 : (VAL323) (ASP396) [view usage] : a.89.1.0 |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |automated matches |automated matches |Uncultured archaeon [TaxId: 115547]
d1beka_ : (SER15) (PHE99) [view usage] : a.93.1.1 |Heme-dependent peroxidases |Heme-dependent peroxidases |CCP-like |Cytochrome c peroxidase, CCP |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
a.93, a.211, c.37, c.47, a.4, a.39, a.73, a.24, a.60, a.280, a.185, a.16, a.97, a.57, a.89