Tableau information
Concept source: d2hmqa_ amino acid (a.a.) range (THR19)(ARG110)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR19) (ALA38) H1
(ALA41) (ALA64) H2
(TYR70) (TRP87) H3
(VAL91) (LYS103) H4
(THR104) (ARG110) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -158.2° H2
H3 24.6° -169.9° H3
H4 -165.9° 18.6° -165.0° H4
H5 -173.2° 28.5° -149.5° -17.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ug7a_ : (VAL11) (ASN107) [view usage] : a.24.24.1 |Four-helical up-and-down bundle |Domain from hypothetical 2610208m17rik protein |Domain from hypothetical 2610208m17rik protein |Domain from hypothetical 2610208m17rik protein |Mouse (Mus musculus) [TaxId: 10090]
d2lk4a_ : (LEU9) (ALA134) [view usage] : a.24.14.0 |Four-helical up-and-down bundle |FAT domain of focal adhesion kinase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1a0ba_ : (MET691) (THR774) [view usage] : a.24.10.1 |Four-helical up-and-down bundle |Histidine-containing phosphotransfer domain, HPT domain |Aerobic respiration control sensor protein, ArcB |Aerobic respiration control sensor protein, ArcB |Escherichia coli [TaxId: 562]
d1a7da_ : (GLU19) (LYS115) [view usage] : a.24.4.1 |Four-helical up-and-down bundle |Hemerythrin-like |Hemerythrin-like |Myohemerythin |Sipunculan worm (Themiste zostericola) [TaxId: 6437]
d3qvya_ : (LEU3) (ARG106) [view usage] : a.24.3.1 |Four-helical up-and-down bundle |Cytochromes |Cytochrome b562 |automated matches |Escherichia coli [TaxId: 562]
d3nmia_ : (LEU3) (TYR105) [view usage] : a.24.3.1 |Four-helical up-and-down bundle |Cytochromes |Cytochrome b562 |automated matches |Escherichia coli [TaxId: 562]
d1i4ya_ : (TYR18) (LYS110) [view usage] : a.24.4.1 |Four-helical up-and-down bundle |Hemerythrin-like |Hemerythrin-like |Hemerythrin |Phascolopsis gouldii [TaxId: 6442]
d3ke5a_ : (ILE53) (GLN171) [view usage] : a.25.2.0 |Ferritin-like |Cobalamin adenosyltransferase-like |automated matches |automated matches |Bacillus cereus [TaxId: 226900]
d2hmqa_ : (THR19) (ARG110) [view usage] : a.24.4.1 |Four-helical up-and-down bundle |Hemerythrin-like |Hemerythrin-like |Hemerythrin |Sipunculid worm (Themiste dyscritum) [TaxId: 6436]
d1a7ea_ : (GLU19) (LYS115) [view usage] : a.24.4.1 |Four-helical up-and-down bundle |Hemerythrin-like |Hemerythrin-like |Myohemerythin |Sipunculan worm (Themiste zostericola) [TaxId: 6437]
d3qapa_ : (THR79) (LEU180) [view usage] : f.13.1.1 |Family A G protein-coupled receptor-like |Family A G protein-coupled receptor-like |Bacteriorhodopsin-like |Sensory rhodopsin II |Natronobacterium pharaonis [TaxId: 2257]
d1b0pa2 : (ASP871) (LYS954) [view usage] : c.36.1.12 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |PFOR PP module |Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI |Desulfovibrio africanus [TaxId: 873]
d4hr3a2 : (LYS255) (GLY366) [view usage] : a.29.3.0 |Bromodomain-like |Acyl-CoA dehydrogenase C-terminal domain-like |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d3hnia_ : (ASP2) (LYS104) [view usage] : a.24.3.1 |Four-helical up-and-down bundle |Cytochromes |Cytochrome b562 |automated matches |Escherichia coli [TaxId: 562]
d3hnja_ : (LEU3) (TYR105) [view usage] : a.24.3.1 |Four-helical up-and-down bundle |Cytochromes |Cytochrome b562 |automated matches |Escherichia coli [TaxId: 562]
d1fr0a_ : (MET693) (LYS778) [view usage] : a.24.10.1 |Four-helical up-and-down bundle |Histidine-containing phosphotransfer domain, HPT domain |Aerobic respiration control sensor protein, ArcB |Aerobic respiration control sensor protein, ArcB |Escherichia coli [TaxId: 562]
d3ub0b_ : (VAL11) (GLN83) [view usage] : a.8.9.0 |immunoglobulin/albumin-binding domain-like |Coronavirus NSP7-like |automated matches |automated matches |Feline infectious peritonitis virus [TaxId: 33734]
d3c1nb1 : (VAL45) (GLY145) [view usage] : c.73.1.3 |Carbamate kinase-like |Carbamate kinase-like |PyrH-like |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d1lm3b_ : (LEU3) (TYR105) [view usage] : a.24.3.1 |Four-helical up-and-down bundle |Cytochromes |Cytochrome b562 |Cytochrome b562 |Escherichia coli [TaxId: 562]
d2j0xb1 : (ILE44) (ASP134) [view usage] : c.73.1.3 |Carbamate kinase-like |Carbamate kinase-like |PyrH-like |Aspartokinase |Escherichia coli [TaxId: 562]
d3fooa_ : (GLU4) (LYS104) [view usage] : a.24.3.1 |Four-helical up-and-down bundle |Cytochromes |Cytochrome b562 |automated matches |Escherichia coli [TaxId: 562]
d1i4za_ : (SER19) (LYS110) [view usage] : a.24.4.1 |Four-helical up-and-down bundle |Hemerythrin-like |Hemerythrin-like |Hemerythrin |Phascolopsis gouldii [TaxId: 6442]
d1m6ta_ : (GLU4) (ILE102) [view usage] : a.24.3.1 |Four-helical up-and-down bundle |Cytochromes |Cytochrome b562 |Cytochrome b562 |Escherichia coli [TaxId: 562]
d1hmda_ : (THR19) (ARG110) [view usage] : a.24.4.1 |Four-helical up-and-down bundle |Hemerythrin-like |Hemerythrin-like |Hemerythrin |Sipunculid worm (Themiste dyscritum) [TaxId: 6436]
d3tola_ : (ASP2) (ARG106) [view usage] : a.24.3.1 |Four-helical up-and-down bundle |Cytochromes |Cytochrome b562 |automated matches |Escherichia coli [TaxId: 562]
d1g5za_ : (ILE45) (SER199) [view usage] : a.24.12.1 |Four-helical up-and-down bundle |Outer surface protein C (OspC) |Outer surface protein C (OspC) |Outer surface protein C (OspC) |Lyme disease spirochete (Borrelia burgdorferi), different strains [TaxId: 139]
d2j0wa1 : (SER41) (GLU132) [view usage] : c.73.1.3 |Carbamate kinase-like |Carbamate kinase-like |PyrH-like |Aspartokinase |Escherichia coli [TaxId: 562]
d2cdqa1 : (LYS68) (GLY163) [view usage] : c.73.1.3 |Carbamate kinase-like |Carbamate kinase-like |PyrH-like |Aspartokinase |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d2a0ba_ : (MET691) (LYS772) [view usage] : a.24.10.1 |Four-helical up-and-down bundle |Histidine-containing phosphotransfer domain, HPT domain |Aerobic respiration control sensor protein, ArcB |Aerobic respiration control sensor protein, ArcB |Escherichia coli [TaxId: 562]
d2z3re_ : (ALA-2) (THR113) [view usage] : a.26.1.2 |4-helical cytokines |4-helical cytokines |Short-chain cytokines |Interleukin-15 (IL-15) |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.36, c.73, a.25, f.13, a.29, a.24, a.26, a.8