Tableau information
Concept source: d1r22b_ amino acid (a.a.) range (PRO46)(LEU102)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO46) (SER58) H1
(SER61) (ILE69) H2
(SER74) (LEU86) H3
(LEU88) (LYS93) E4
(ARG96) (LEU102) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 118.6° H2
H3 -80.3° 117.3° H3
E4 55.0° 123.7° -115.8° E4
E5 -99.9° -64.6° 53.0° 155.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3bz6a2 : (PRO105) (HIS170) [view usage] : a.4.5.75 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |PSPTO2686-like |Hypothetical protein PSPTO2686 |Pseudomonas syringae pv. tomato [TaxId: 323]
d1zb6a1 : (SER180) (ILE234) [view usage] : d.313.1.1 |Antiparallel beta/alpha barrel (PT-barrel) |Prenyltransferase-like |Prenyltransferase-like |Aromatic prenyltransferase |Streptomyces sp. CL190 [TaxId: 93372]
d3jspb1 : (THR5) (GLN70) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2dk5a1 : (ASN20) (LEU82) [view usage] : a.4.5.85 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |RPO3F domain-like |DNA-directed RNA polymerase III subunit RPC6, RPO3F |Human (Homo sapiens) [TaxId: 9606]
d1xn7a_ : (SER3) (LEU77) [view usage] : a.4.5.62 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Hypothetical protein YhgG |Hypothetical protein YhgG |Escherichia coli [TaxId: 562]
d2j5oa1 : (LEU749) (ALA805) [view usage] : a.4.5.67 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |FtsK C-terminal domain-like |DNA translocase FtsK |Pseudomonas aeruginosa [TaxId: 287]
d1p92a1 : (LEU4) (MET64) [view usage] : a.4.5.24 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Iron-dependent repressor protein |Diphtheria toxin repressor (DtxR) |Corynebacterium diphtheriae [TaxId: 1717]
d1zcwa_ : (SER180) (ILE234) [view usage] : d.313.1.1 |Antiparallel beta/alpha barrel (PT-barrel) |Prenyltransferase-like |Prenyltransferase-like |Aromatic prenyltransferase |Streptomyces sp. CL190 [TaxId: 93372]
d3mwma_ : (GLY10) (ARG78) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Streptomyces coelicolor [TaxId: 1902]
d1tw2a1 : (ARG38) (PRO87) [view usage] : a.4.5.29 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Plant O-methyltransferase, N-terminal domain |Carminomycin 4-O-methyltransferase |Streptomyces peucetius [TaxId: 1950]
d1nhaa_ : (THR455) (GLU517) [view usage] : a.4.5.30 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |C-terminal domain of the rap74 subunit of TFIIF |C-terminal domain of the rap74 subunit of TFIIF |Human (Homo sapiens) [TaxId: 9606]
d1bm9a_ : (LYS14) (PHE90) [view usage] : a.4.5.7 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Replication terminator protein (RTP) |Replication terminator protein (RTP) |Bacillus subtilis [TaxId: 1423]
d2esha1 : (PHE9) (ARG81) [view usage] : a.4.5.61 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |PadR-like |Hypothetical protein TM0937 |Thermotoga maritima [TaxId: 2336]
d1b4aa1 : (GLY4) (TYR62) [view usage] : a.4.5.3 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Arginine repressor (ArgR), N-terminal DNA-binding domain |Arginine repressor (ArgR), N-terminal DNA-binding domain |Bacillus stearothermophilus [TaxId: 1422]
d4i7hb_ : (GLU29) (PHE94) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Streptococcus pyogenes [TaxId: 198466]
d1u5tb2 : (VAL494) (LYS558) [view usage] : a.4.5.54 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Vacuolar sorting protein domain |Vacuolar protein sorting-associated protein VPS36 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1fwza1 : (ASP6) (MET64) [view usage] : a.4.5.24 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Iron-dependent repressor protein |Diphtheria toxin repressor (DtxR) |Corynebacterium diphtheriae [TaxId: 1717]
d1u5ta2 : (THR166) (ASP225) [view usage] : a.4.5.54 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Vacuolar sorting protein domain |Vacuolar sorting protein SNF8 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1j0ra_ : (LYS14) (PHE90) [view usage] : a.4.5.7 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Replication terminator protein (RTP) |Replication terminator protein (RTP) |Bacillus subtilis [TaxId: 1423]
d1ku9a_ : (LYS26) (ALA86) [view usage] : a.4.5.36 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |DNA-binding protein Mj223 |DNA-binding protein Mj223 |Methanococcus jannaschii [TaxId: 2190]
d3cuqa2 : (MET178) (LEU236) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1lvaa4 : (GLN575) (VAL631) [view usage] : a.4.5.35 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |C-terminal fragment of elongation factor SelB |C-terminal fragment of elongation factor SelB |Moorella thermoacetica [TaxId: 1525]
d4lllo_ : (TYR41) (LEU93) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d3pqkb_ : (HIS34) (LEU91) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Xylella fastidiosa [TaxId: 2371]
d1aoya_ : (GLU9) (ALA71) [view usage] : a.4.5.3 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Arginine repressor (ArgR), N-terminal DNA-binding domain |Arginine repressor (ArgR), N-terminal DNA-binding domain |Escherichia coli [TaxId: 562]
d2fbha1 : (TRP38) (THR97) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |Transcriptional regulator PA3341 |Pseudomonas aeruginosa [TaxId: 287]
d2p5ka_ : (LYS3) (LEU64) [view usage] : a.4.5.3 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Arginine repressor (ArgR), N-terminal DNA-binding domain |Arginine repressor (ArgR), N-terminal DNA-binding domain |Bacillus subtilis [TaxId: 1423]
d3mwmb_ : (ALA12) (ARG78) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Streptomyces coelicolor [TaxId: 1902]
d1j0rb_ : (LYS14) (ASP92) [view usage] : a.4.5.7 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Replication terminator protein (RTP) |Replication terminator protein (RTP) |Bacillus subtilis [TaxId: 1423]
d3jsoa1 : (THR5) (LEU69) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3pqka_ : (HIS34) (LEU91) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Xylella fastidiosa [TaxId: 2371]
d2isya1 : (THR7) (LEU64) [view usage] : a.4.5.24 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Iron-dependent repressor protein |Iron-dependent regulator IdeR |Mycobacterium tuberculosis [TaxId: 1773]
d2qq9a1 : (VAL5) (MET64) [view usage] : a.4.5.24 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Iron-dependent repressor protein |Diphtheria toxin repressor (DtxR) |Corynebacterium diphtheriae [TaxId: 1717]
d1mkma1 : (THR3) (PRO60) [view usage] : a.4.5.33 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Transcriptional regulator IclR, N-terminal domain |Transcriptional regulator IclR, N-terminal domain |Thermotoga maritima [TaxId: 2336]
d3j38z_ : (LYS51) (ARG110) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Drosophila melanogaster [TaxId: 7227]
d4pghb1 : (GLY40) (TYR103) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Sorghum (Sorghum bicolor) [TaxId: 4558]
d3pqkf_ : (HIS34) (LEU91) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Xylella fastidiosa [TaxId: 2371]
d1leaa_ : (THR5) (GLN70) [view usage] : a.4.5.2 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |LexA repressor, N-terminal DNA-binding domain |LexA repressor, N-terminal DNA-binding domain |Escherichia coli [TaxId: 562]
d1hsta_ : (THR27) (LEU95) [view usage] : a.4.5.13 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Linker histone H1/H5 |Histone H5, globular domain |Chicken (Gallus gallus) [TaxId: 9031]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
i.1, a.4, d.313