Tableau information
Concept source: d1z91a1 amino acid (a.a.) range (TYR40)(LEU100)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHHEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR40) (HIS52) H1
(THR56) (LEU64) H2
(ASP67) (GLY82) H3
(LEU83) (ARG88) E4
(SER95) (LEU100) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 122.5° H2
H3 -70.8° 114.7° H3
E4 72.3° -126.7° -118.4° E4
E5 -90.7° 71.0° 43.8° 160.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±7.9° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2uwma1 : (TRP443) (LEU504) [view usage] : a.4.5.35 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |C-terminal fragment of elongation factor SelB |C-terminal fragment of elongation factor SelB |Moorella thermoacetica [TaxId: 1525]
d1hw2a1 : (PRO8) (ASN73) [view usage] : a.4.5.6 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |GntR-like transcriptional regulators |Fatty acid responsive transcription factor FadR, N-terminal domain |Escherichia coli [TaxId: 562]
d3pqja_ : (PRO35) (LEU91) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Xylella fastidiosa [TaxId: 2371]
d1lvaa1 : (SER378) (SER436) [view usage] : a.4.5.35 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |C-terminal fragment of elongation factor SelB |C-terminal fragment of elongation factor SelB |Moorella thermoacetica [TaxId: 1525]
d4ld5c_ : (THR30) (LEU93) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1zela1 : (SER16) (PRO74) [view usage] : a.4.5.83 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Rv2827c N-terminal domain-like |Hypothetical protein Rv2827c |Mycobacterium tuberculosis [TaxId: 1773]
d2dpta_ : (ALA94) (VAL147) [view usage] : d.108.1.6 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |LFTR-like |automated matches |Escherichia coli [TaxId: 562]
d1kyzc1 : (SER58) (GLY107) [view usage] : a.4.5.29 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Plant O-methyltransferase, N-terminal domain |Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d4lmya_ : (THR28) (CYS104) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Streptococcus pyogenes [TaxId: 198466]
d1bo4b_ : (VAL37) (LYS98) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Aminoglycoside 3-N-acetyltransferase |Serratia marcescens [TaxId: 615]
d1cf7b_ : (GLY70) (TRP145) [view usage] : a.4.5.17 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Cell cycle transcription factor e2f-dp |Cell cycle transcription factor DP-2 |Human (Homo sapiens) [TaxId: 9606]
d2ve9f_ : (TYR750) (ALA805) [view usage] : a.4.5.67 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |FtsK C-terminal domain-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d2zmea1 : (GLY92) (VAL172) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1foka3 : (ASP302) (LEU367) [view usage] : a.4.5.12 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Restriction endonuclease FokI, N-terminal (recognition) domain |Restriction endonuclease FokI, N-terminal (recognition) domain |Flavobacterium okeanokoites [TaxId: 244]
d3bwgb1 : (LEU2) (HIS69) [view usage] : a.4.5.6 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |GntR-like transcriptional regulators |Transcriptional regulator YydK |Bacillus subtilis [TaxId: 1423]
d4ee8a_ : (PRO184) (MET238) [view usage] : d.313.1.0 |Antiparallel beta/alpha barrel (PT-barrel) |Prenyltransferase-like |automated matches |automated matches |Streptomyces cinnamonensis [TaxId: 1900]
d1j75a_ : (LEU114) (ILE168) [view usage] : a.4.5.19 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Z-DNA binding domain |Dlm-1 |Mouse (Mus musculus) [TaxId: 10090]
d2ve9b_ : (TYR750) (ALA805) [view usage] : a.4.5.67 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |FtsK C-terminal domain-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1j5ya1 : (MSE3) (ALA65) [view usage] : a.4.5.1 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Biotin repressor-like |Putative transcriptional regulator TM1602, N-terminal domain |Thermotoga maritima [TaxId: 2336]
d2fokb3 : (ASP302) (LEU367) [view usage] : a.4.5.12 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Restriction endonuclease FokI, N-terminal (recognition) domain |Restriction endonuclease FokI, N-terminal (recognition) domain |Flavobacterium okeanokoites [TaxId: 244]
d1wsua1 : (GLU513) (ARG574) [view usage] : a.4.5.35 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |C-terminal fragment of elongation factor SelB |C-terminal fragment of elongation factor SelB |Moorella thermoacetica [TaxId: 1525]
d2v9va1 : (SER378) (SER436) [view usage] : a.4.5.35 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |C-terminal fragment of elongation factor SelB |automated matches |Moorella thermoacetica [TaxId: 1525]
d1u6ga1 : (THR689) (TYR773) [view usage] : a.4.5.34 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |SCF ubiquitin ligase complex WHB domain |Anaphase promoting complex (APC) |Human (Homo sapiens) [TaxId: 9606]
d2dptb_ : (ALA94) (VAL147) [view usage] : d.108.1.6 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |LFTR-like |automated matches |Escherichia coli [TaxId: 562]
d2ve9a_ : (TYR750) (ALA805) [view usage] : a.4.5.67 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |FtsK C-terminal domain-like |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1iuya_ : (ASP22) (TYR90) [view usage] : a.4.5.34 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |SCF ubiquitin ligase complex WHB domain |Cullin-3 homologue |Mouse (Mus musculus) [TaxId: 10090]
d2hyec1 : (THR677) (ALA759) [view usage] : a.4.5.34 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |SCF ubiquitin ligase complex WHB domain |Cullin-4A |Human (Homo sapiens) [TaxId: 9606]
d2plya3 : (SER512) (HIS573) [view usage] : a.4.5.35 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |C-terminal fragment of elongation factor SelB |C-terminal fragment of elongation factor SelB |Moorella thermoacetica [TaxId: 1525]
d1lvaa2 : (GLU438) (LEU504) [view usage] : a.4.5.35 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |C-terminal fragment of elongation factor SelB |C-terminal fragment of elongation factor SelB |Moorella thermoacetica [TaxId: 1525]
d2cwea1 : (GLU19) (ARG81) [view usage] : a.4.5.58 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Hypothetical protein PH1932 |Hypothetical protein PH1932 |Pyrococcus horikoshii [TaxId: 53953]
d3jspa1 : (THR5) (GLN70) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2fe3b_ : (THR21) (CYS96) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1bo4a_ : (VAL37) (LYS98) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Aminoglycoside 3-N-acetyltransferase |Serratia marcescens [TaxId: 615]
d2k4ja_ : (ARG44) (TYR115) [view usage] : a.4.6.0 |DNA/RNA-binding 3-helical bundle |C-terminal effector domain of the bipartite response regulators |automated matches |automated matches |Helicobacter pylori [TaxId: 85963]
d3bwga1 : (GLN6) (HIS69) [view usage] : a.4.5.6 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |GntR-like transcriptional regulators |Transcriptional regulator YydK |Bacillus subtilis [TaxId: 1423]
d4p5oa2 : (LYS689) (TYR774) [view usage] : a.4.5.34 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |SCF ubiquitin ligase complex WHB domain |Anaphase promoting complex (APC) |Human (Homo sapiens) [TaxId: 9606]
d1w7pd2 : (PHE492) (LYS558) [view usage] : a.4.5.54 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Vacuolar sorting protein domain |Vacuolar protein sorting-associated protein VPS36 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1dpua_ : (THR206) (ASP268) [view usage] : a.4.5.16 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |C-terminal domain of RPA32 |C-terminal domain of RPA32 |Human (Homo sapiens) [TaxId: 9606]
d1ulya_ : (GLU19) (ARG81) [view usage] : a.4.5.58 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Hypothetical protein PH1932 |Hypothetical protein PH1932 |Pyrococcus horikoshii [TaxId: 53953]
d1lvaa3 : (SER512) (HIS573) [view usage] : a.4.5.35 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |C-terminal fragment of elongation factor SelB |C-terminal fragment of elongation factor SelB |Moorella thermoacetica [TaxId: 1525]
d4ld5a_ : (THR30) (LEU93) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1jhfa1 : (THR5) (GLN70) [view usage] : a.4.5.2 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |LexA repressor, N-terminal DNA-binding domain |LexA repressor, N-terminal DNA-binding domain |Escherichia coli [TaxId: 562]
d1ldja1 : (THR690) (ALA776) [view usage] : a.4.5.34 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |SCF ubiquitin ligase complex WHB domain |Anaphase promoting complex (APC) |Human (Homo sapiens) [TaxId: 9606]
d2dk8a1 : (PRO12) (ILE73) [view usage] : a.4.5.85 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |RPO3F domain-like |DNA-directed RNA polymerase III subunit RPC6, RPO3F |Mouse (Mus musculus) [TaxId: 10090]
d2lnba_ : (ARG16) (LEU74) [view usage] : a.4.5.0 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2htja1 : (LYS2) (LEU59) [view usage] : a.4.5.73 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |FaeA-like |P fimbrial regulatory protein PapI |Escherichia coli [TaxId: 562]
d3u5cz_ : (GLN44) (ARG103) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1t6sa1 : (MET1) (PHE70) [view usage] : a.4.5.60 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |ScpB/YpuH-like |Segregation and condensation protein B, ScpB |Chlorobium tepidum [TaxId: 1097]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
i.1, d.108, a.4, d.313