Tableau information
Concept source: d4ovqa_ amino acid (a.a.) range (ILE241)(THR325)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHEHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ILE241) (LEU247) H1
(SER248) (GLY285) H2
(VAL287) (ASP293) E3
(ALA295) (ALA311) H4
(ASN312) (THR325) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 136.5° H2
E3 -84.5° -108.6° E3
H4 -72.1° 151.2° -72.1° H4
H5 71.8° -65.1° -100.5° 143.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4n4ua_ : (LYS236) (LEU324) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 257310]
d4pbqa_ : (SER240) (LYS328) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Haemophilus influenzae [TaxId: 656912]
d4maga_ : (SER217) (MET299) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Vibrio cholerae [TaxId: 593588]
d4l4zb_ : (SER180) (LYS238) [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d4l4za_ : (ALA181) (LYS238) [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d4mcoc_ : (SER249) (LEU338) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |TRAP dicarboxylate transporter |Rhodoferax ferrireducens [TaxId: 338969]
d4ovqa_ : (ILE241) (THR325) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Roseobacter denitrificans [TaxId: 375451]
d4o94c_ : (ASN241) (GLY317) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
d4napc_ : (ASN243) (GLN338) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Desulfovibrio alaskensis [TaxId: 207559]
d4n8ga_ : (GLY249) (ALA337) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Chromohalobacter salexigens [TaxId: 290398]
d4x04a_ : (LYS246) (ASP325) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Citrobacter koseri [TaxId: 290338]
d4o94b_ : (ASN241) (PHE312) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316058]
d4nq8a_ : (ALA242) (PHE312) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 257310]
d4n4ub_ : (ASN235) (LEU324) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Bordetella bronchiseptica [TaxId: 257310]
d4ghlb_ : (LYS244) (LEU300) [view usage] : d.388.1.1 |Filoviridae VP35-like |Filoviridae VP35-like |Filoviridae VP35 |Filoviridae VP35 |Lake Victoria marburgvirus [TaxId: 33728]
d4pf8a_ : (SER240) (ALA325) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Sulfitobacter sp. [TaxId: 314267]
d1d02a_ : (TRP12) (ILE66) [view usage] : c.52.1.8 |Restriction endonuclease-like |Restriction endonuclease-like |Restriction endonuclease MunI |Restriction endonuclease MunI |Mycoplasma, unidentified species [TaxId: 2093]
d2j4ra2 : (VAL168) (LYS234) [view usage] : c.55.1.8 |Ribonuclease H-like motif |Actin-like ATPase domain |Ppx/GppA phosphatase |automated matches |Aquifex aeolicus [TaxId: 63363]
d4mcoa_ : (SER249) (LEU342) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |TRAP dicarboxylate transporter |Rhodoferax ferrireducens [TaxId: 338969]
d4o8md_ : (GLY242) (SER326) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Actinobacillus succinogenes [TaxId: 339671]
d4ovra_ : (SER240) (ALA323) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Xanthobacter autotrophicus [TaxId: 78245]
d4a17n_ : (TYR26) (GLN79) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d4gh9a_ : (LYS244) (LEU300) [view usage] : d.388.1.1 |Filoviridae VP35-like |Filoviridae VP35-like |Filoviridae VP35 |Filoviridae VP35 |Marburg virus [TaxId: 33727]
d3ks4b_ : (LEU244) (LEU300) [view usage] : d.388.1.1 |Filoviridae VP35-like |Filoviridae VP35-like |Filoviridae VP35 |Filoviridae VP35 |Reston ebolavirus [TaxId: 129003]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.94, i.1, c.124, c.55, c.52, d.388