Tableau information
Concept source: d1icva_ amino acid (a.a.) range (ASP2)(ALA78)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHEHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASP2) (LYS9) H1
(THR23) (GLN35) H2
(TRP46) (SER52) E3
(THR53) (ALA65) H4
(VAL69) (ALA78) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -96.3° H2
E3 70.6° 166.7° E3
H4 -58.9° 50.2° -117.9° H4
H5 130.4° -122.8° -69.7° 170.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3kwka_ : (ALA35) (GLN104) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d1f2ja_ : (LEU11) (GLY57) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Fructose-1,6-bisphosphate aldolase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d1uwka_ : (VAL336) (GLU399) [view usage] : e.51.1.1 |Urocanase |Urocanase |Urocanase |Urocanate hydratase HutU |Pseudomonas putida [TaxId: 303]
d3bema_ : (MSE1) (SER74) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d3gr3a_ : (ASP7) (GLY108) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Bartonella henselae [TaxId: 283166]
d3gagb_ : (MSE1) (ALA75) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Streptococcus mutans [TaxId: 1309]
d3bemb_ : (HIS0) (SER74) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1uwla_ : (VAL336) (GLU399) [view usage] : e.51.1.1 |Urocanase |Urocanase |Urocanase |Urocanate hydratase HutU |Pseudomonas putida [TaxId: 303]
d2fknb_ : (LEU332) (GLU395) [view usage] : e.51.1.1 |Urocanase |Urocanase |Urocanase |automated matches |Bacillus subtilis [TaxId: 1423]
d1icva_ : (ASP2) (ALA78) [view usage] : d.90.1.1 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |NADH oxidase/flavin reductase |Oxygen-insensitive NAD(P)H nitroreductase |Escherichia coli, minor form, NfnB [TaxId: 562]
d2frea1 : (PRO15) (ALA85) [view usage] : d.90.1.1 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |NADH oxidase/flavin reductase |NAD(P)H-flavin oxidoreductase Atu0013 |Agrobacterium tumefaciens [TaxId: 358]
d2rhsc_ : (LEU82) (SER160) [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Staphylococcus haemolyticus [TaxId: 1283]
d4dn2b_ : (GLU2) (GLU85) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Geobacter metallireducens [TaxId: 269799]
d4qgkb_ : (ILE389) (PHE454) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3ge5b_ : (ARG9) (ALA79) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Porphyromonas gingivalis [TaxId: 242619]
d4dn2a_ : (THR3) (GLU85) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Geobacter metallireducens [TaxId: 269799]
d2zwya1 : (ASP11) (ASN62) [view usage] : c.1.8.11 |TIM beta/alpha-barrel |(Trans)glycosidases |Putative alpha-L-fucosidase, catalytic domain |automated matches |Thermotoga maritima [TaxId: 2336]
d2fkna_ : (LEU332) (GLU395) [view usage] : e.51.1.1 |Urocanase |Urocanase |Urocanase |automated matches |Bacillus subtilis [TaxId: 1423]
d2wtxd_ : (PRO229) (LYS289) [view usage] : c.87.1.6 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Trehalose-6-phosphate synthase, OtsA |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1xi9c_ : (SER5) (GLY62) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Putative alanine aminotransferase |Pyrococcus furiosus [TaxId: 2261]
d2freb_ : (PRO15) (ALA85) [view usage] : d.90.1.1 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |NADH oxidase/flavin reductase |NAD(P)H-flavin oxidoreductase Atu0013 |Agrobacterium tumefaciens [TaxId: 358]
d3ge5a_ : (ARG9) (ALA79) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Porphyromonas gingivalis [TaxId: 242619]
d3eo8a_ : (LEU3) (THR93) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
d2pjrf1 : (GLY781) (LEU855) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |DEXX box DNA helicase |Bacillus stearothermophilus, PcrA [TaxId: 1422]
d2dy4d2 : (GLY756) (LYS816) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d3ge6a_ : (ASP8) (SER80) [view usage] : d.90.1.0 |FMN-dependent nitroreductase-like |FMN-dependent nitroreductase-like |automated matches |automated matches |Exiguobacterium sibiricum [TaxId: 262543]
d1kaea_ : (GLU356) (ALA434) [view usage] : c.82.1.2 |ALDH-like |ALDH-like |L-histidinol dehydrogenase HisD |L-histidinol dehydrogenase HisD |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.1, c.67, c.82, c.37, d.104, c.87, d.90, e.51