Tableau information
Concept source: d3evga_ amino acid (a.a.) range (LEU40)(THR104)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(LEU40) (GLY48) H1
(ARG57) (ASN69) H2
(GLY75) (GLY81) E3
(GLY85) (LEU94) H4
(ARG98) (THR104) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 122.4° H2
E3 -88.5° 139.7° E3
H4 96.6° -42.6° 169.6° H4
E5 -82.7° 137.4° -11.3° -179.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2brta_ : (ARG6) (ASN84) [view usage] : b.82.2.1 |Double-stranded beta-helix |Clavaminate synthase-like |Penicillin synthase-like |automated matches |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1t0aa_ : (ASP67) (THR135) [view usage] : d.79.5.1 |Bacillus chorismate mutase-like |IpsF-like |IpsF-like |2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF |Shewanella oneidensis [TaxId: 70863]
d1o4sa_ : (SER88) (PHE143) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Aspartate aminotransferase, AAT |Thermotoga maritima [TaxId: 2336]
d3u5co_ : (THR43) (PRO120) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, cytoplasmic (80S ribosome functional complex) |Saccharomyces cerevisiae [TaxId: 559292]
d1sa0a2 : (ALA278) (TYR357) [view usage] : d.79.2.1 |Bacillus chorismate mutase-like |Tubulin C-terminal domain-like |Tubulin, C-terminal domain |Tubulin alpha-subunit |Cow (Bos taurus) [TaxId: 9913]
d1hzpa2 : (TRP195) (ILE269) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Ketoacyl-ACP synthase III (FabH) |Mycobacterium tuberculosis [TaxId: 1773]
d4a17x_ : (PHE27) (ASN101) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, cytoplasmic (60S subunit) |Tetrahymena thermophila [TaxId: 5911]
d2px5a_ : (ARG37) (THR104) [view usage] : c.66.1.25 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |mRNA cap methylase |An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 |Murray valley encephalitis virus (strain mve-1-51) [TaxId: 301478]
d2pxaa_ : (ARG37) (THR104) [view usage] : c.66.1.25 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |mRNA cap methylase |An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 |Murray valley encephalitis virus (strain mve-1-51) [TaxId: 301478]
d2xbmb_ : (ARG38) (PRO108) [view usage] : c.66.1.25 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |mRNA cap methylase |automated matches |Dengue virus [TaxId: 12637]
d3esja_ : (ASP65) (THR134) [view usage] : d.79.5.1 |Bacillus chorismate mutase-like |IpsF-like |IpsF-like |2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF |Escherichia coli K-12 [TaxId: 83333]
d1u6ea2 : (TRP195) (ILE269) [view usage] : c.95.1.2 |Thiolase-like |Thiolase-like |Chalcone synthase-like |Ketoacyl-ACP synthase III (FabH) |Mycobacterium tuberculosis [TaxId: 1773]
d2j88a_ : (CYS22) (PHE112) [view usage] : c.1.8.9 |TIM beta/alpha-barrel |(Trans)glycosidases |Bee venom hyaluronidase |automated matches |Honeybee (Apis mellifera) [TaxId: 7460]
d1ubga1 : (ASP7) (ASP96) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |RecA protein, ATPase-domain |Mycobacterium smegmatis [TaxId: 1772]
d1izca_ : (GLN8) (ASP70) [view usage] : c.1.12.5 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |HpcH/HpaI aldolase |Macrophomate synthase |Macrophoma commelinae [TaxId: 108330]
d1kywc2 : (THR161) (LEU232) [view usage] : c.66.1.12 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Plant O-methyltransferase, C-terminal domain |Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d4oeta_ : (HIS285) (LYS367) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Campylobacter jejuni [TaxId: 192222]
d2jdxa_ : (ALA219) (LYS297) [view usage] : d.126.1.2 |Pentein, beta/alpha-propeller |Pentein |Amidinotransferase |L-arginine: glycine amidinotransferase |Human (Homo sapiens) [TaxId: 9606]
d3qvma_ : (SER178) (LEU250) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Oleispira antarctica [TaxId: 188908]
d1ecbc1 : (LEU253) (GLN322) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Glutamine PRPP amidotransferase, C-terminal domain |Escherichia coli [TaxId: 562]
d1jy8a_ : (ASP65) (GLU135) [view usage] : d.79.5.1 |Bacillus chorismate mutase-like |IpsF-like |IpsF-like |2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF |Escherichia coli [TaxId: 562]
d2ocka_ : (GLY83) (GLY146) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3fuua_ : (SER6) (LYS76) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d3qvqd_ : (GLN89) (PHE150) [view usage] : c.1.18.0 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |automated matches |automated matches |Oleispira antarctica [TaxId: 188908]
d4a5oa2 : (PRO125) (ARG191) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d2g39a1 : (PRO9) (GLY65) [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Acetyl-CoA hydrolase (PA5445) |Pseudomonas aeruginosa [TaxId: 287]
d3vdpa_ : (LEU35) (HIS106) [view usage] : e.49.1.1 |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Thermoanaerobacter tengcongensis [TaxId: 273068]
d1w5ma_ : (SER220) (VAL285) [view usage] : c.1.10.3 |TIM beta/alpha-barrel |Aldolase |5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d2xbma_ : (ARG38) (PRO108) [view usage] : c.66.1.25 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |mRNA cap methylase |automated matches |Dengue virus [TaxId: 12637]
d2xbmc_ : (ARG38) (THR104) [view usage] : c.66.1.25 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |mRNA cap methylase |automated matches |Dengue virus [TaxId: 12637]
d3reoa2 : (ASN164) (ASP234) [view usage] : c.66.1.12 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Plant O-methyltransferase, C-terminal domain |automated matches |Clarkia breweri [TaxId: 36903]
d2g39b1 : (LEU8) (GLY65) [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Acetyl-CoA hydrolase (PA5445) |Pseudomonas aeruginosa [TaxId: 287]
d4arva_ : (THR27) (GLN115) [view usage] : c.60.1.0 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |automated matches |automated matches |Yersinia kristensenii [TaxId: 28152]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, b.82, c.67, c.69, c.94, c.2, i.1, c.66, c.124, c.37, c.95, c.60, d.126, c.61, d.79, e.49