Tableau information
Concept source: d2pfkd_ amino acid (a.a.) range (PHE73)(PRO123)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PHE73) (ASP78) H1
(ASP78) (GLY93) H2
(ASP95) (GLY101) E3
(GLY102) (GLY116) H4
(PRO118) (PRO123) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -95.6° H2
E3 -131.1° 126.0° E3
H4 36.6° -65.1° -167.6° H4
E5 -140.3° 112.2° -13.9° -172.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4oh7a1 : (ALA18) (THR79) [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Brucella melitensis [TaxId: 546272]
d3rdka_ : (SER22) (VAL82) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Paenibacillus sp. [TaxId: 324057]
d2e5lk1 : (GLY52) (PRO113) [view usage] : c.55.4.1 |Ribonuclease H-like motif |Translational machinery components |Ribosomal protein L18 and S11 |Ribosomal protein S11 |Thermus thermophilus [TaxId: 274]
d1yrec_ : (ASP103) (ASN160) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1yova_ : (PRO109) (THR155) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
d3c3ya_ : (ASP130) (ASP180) [view usage] : c.66.1.1 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |COMT-like |automated matches |Mesembryanthemum crystallinum [TaxId: 3544]
d2dy0b_ : (VAL31) (ARG86) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4m0kb_ : (ILE29) (ARG84) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Rhodothermus marinus [TaxId: 518766]
d1l1qa_ : (SER29) (ARG83) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Adenine PRTase |Giardia intestinalis [TaxId: 5741]
d1phpa_ : (TYR120) (PHE169) [view usage] : c.86.1.1 |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Bacillus stearothermophilus [TaxId: 1422]
d3hbfa_ : (ARG89) (THR146) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Medicago truncatula [TaxId: 3880]
d3bbnk1 : (ARG62) (ASP121) [view usage] : i.1.1.1 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Ribosome complexes |Eukaryotic, chloroplast (70S ribosome functional complex) |Spinach (Spinacia oleracea) [TaxId: 3562]
d4i36a_ : (CYS73) (PRO123) [view usage] : c.89.1.1 |Phosphofructokinase |Phosphofructokinase |Phosphofructokinase |ATP-dependent phosphofructokinase |Bacillus stearothermophilus [TaxId: 1422]
d2yv1a1 : (PRO79) (GLY126) [view usage] : c.2.1.8 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |CoA-binding domain |Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain |Methanocaldococcus jannaschii [TaxId: 243232]
d1yuma_ : (TRP117) (THR173) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d2aamb_ : (GLY204) (TYR262) [view usage] : c.1.8.15 |TIM beta/alpha-barrel |(Trans)glycosidases |TM1410-like |Hypothetical protein TM1410 |Thermotoga maritima [TaxId: 2336]
d1npya1 : (GLY190) (GLY235) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Shikimate 5-dehydrogenase-like protein HI0607 |Haemophilus influenzae [TaxId: 727]
d1h0ka2 : (THR244) (SER300) [view usage] : c.2.1.1 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Alcohol dehydrogenase-like, C-terminal domain |2,4-dienoyl-CoA reductase |Yeast (Candida tropicalis) [TaxId: 5482]
d2wnsa_ : (LEU40) (LYS98) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1uaaa1 : (ASP185) (ASP242) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |DEXX box DNA helicase |Escherichia coli, RepD [TaxId: 562]
d1mt3a_ : (GLY218) (PHE266) [view usage] : c.69.1.7 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Proline iminopeptidase-like |Tricorn interacting factor F1 |Thermoplasma acidophilum [TaxId: 2303]
d1gu7a2 : (THR244) (SER300) [view usage] : c.2.1.1 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Alcohol dehydrogenase-like, C-terminal domain |2,4-dienoyl-CoA reductase |Yeast (Candida tropicalis) [TaxId: 5482]
d3dlta_ : (THR167) (ASP216) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Lactobacillus rhamnosus [TaxId: 486408]
d1zzma1 : (PRO15) (LEU63) [view usage] : c.1.9.12 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |TatD Mg-dependent DNase-like |Putative deoxyribonuclease YjjV |Escherichia coli [TaxId: 562]
d1b0pa3 : (VAL302) (ARG362) [view usage] : c.48.1.3 |TK C-terminal domain-like |TK C-terminal domain-like |Pyruvate-ferredoxin oxidoreductase, PFOR, domain II |Pyruvate-ferredoxin oxidoreductase, PFOR, domain II |Desulfovibrio africanus [TaxId: 873]
d2lxna_ : (ASP54) (ARG92) [view usage] : c.23.16.1 |Flavodoxin-like |Class I glutamine amidotransferase-like |Class I glutamine amidotransferases (GAT) |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d1l8aa3 : (THR762) (GLY824) [view usage] : c.48.1.1 |TK C-terminal domain-like |TK C-terminal domain-like |Transketolase C-terminal domain-like |Pyruvate dehydrogenase E1 component, C-domain |Escherichia coli [TaxId: 562]
d3mgaa2 : (THR242) (SER310) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Salmonella enterica [TaxId: 90371]
d3qvma_ : (THR74) (CYS129) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Oleispira antarctica [TaxId: 188908]
d2wtxd_ : (SER68) (LEU153) [view usage] : c.87.1.6 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Trehalose-6-phosphate synthase, OtsA |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4i36b_ : (PRO74) (PRO123) [view usage] : c.89.1.1 |Phosphofructokinase |Phosphofructokinase |Phosphofructokinase |ATP-dependent phosphofructokinase |Bacillus stearothermophilus [TaxId: 1422]
d2cb0b_ : (PRO64) (SER110) [view usage] : c.80.1.0 |SIS domain |SIS domain |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d1miob_ : (LYS225) (ARG265) [view usage] : c.92.2.3 |Chelatase-like |"Helical backbone" metal receptor |Nitrogenase iron-molybdenum protein |Nitrogenase iron-molybdenum protein, beta chain |Clostridium pasteurianum [TaxId: 1501]
d3nv8b_ : (GLY339) (GLU415) [view usage] : c.1.10.8 |TIM beta/alpha-barrel |Aldolase |Class-II DAHP synthetase |Probable DAHP synthetase AroG, phenylalanine-repressible |Mycobacterium tuberculosis [TaxId: 1773]
d2ybea_ : (HIS124) (GLY185) [view usage] : c.86.1.1 |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1yrea1 : (ASP103) (ASN160) [view usage] : d.108.1.1 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-acetyl transferase, NAT |Hypothetical protein PA3270 |Pseudomonas aeruginosa [TaxId: 287]
d2pjra1 : (ASP191) (GLY250) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |DEXX box DNA helicase |Bacillus stearothermophilus, PcrA [TaxId: 1422]
d4j7aa_ : (TRP280) (HIS329) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Uncultured bacterium [TaxId: 77133]
d2pjrf1 : (ASP891) (GLY950) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |DEXX box DNA helicase |Bacillus stearothermophilus, PcrA [TaxId: 1422]
d4kxqa_ : (PRO419) (ASN465) [view usage] : c.31.1.0 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xrla_ : (GLY218) (ASP268) [view usage] : c.69.1.7 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Proline iminopeptidase-like |Tricorn interacting factor F1 |Thermoplasma acidophilum [TaxId: 2303]
d3gzna_ : (SER115) (THR162) [view usage] : c.111.1.2 |Activating enzymes of the ubiquitin-like proteins |Activating enzymes of the ubiquitin-like proteins |Ubiquitin activating enzymes (UBA) |Amyloid beta precursor protein-binding protein 1, APPBP1 |Human (Homo sapiens) [TaxId: 9606]
d1f0ka_ : (ILE71) (GLN127) [view usage] : c.87.1.2 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Peptidoglycan biosynthesis glycosyltransferase MurG |Peptidoglycan biosynthesis glycosyltransferase MurG |Escherichia coli [TaxId: 562]
d3e5ha_ : (GLY70) (GLY128) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1orea_ : (SER30) (ARG87) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Adenine PRTase |Human (Homo sapiens) [TaxId: 9606]
d2i1la2 : (ILE77) (ASP127) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |FMN adenylyltransferase domain of bifunctional FAD synthetase |Thermotoga maritima [TaxId: 2336]
d2waga_ : (ASN111) (VAL168) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
d2xh8a_ : (SER128) (ASN209) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Salmonella enterica [TaxId: 90371]
d1imoa_ : (SER836) (GLN881) [view usage] : c.15.1.2 |BRCT domain |BRCT domain |DNA ligase |DNA ligase III alpha |Human (Homo sapiens) [TaxId: 9606]
d4ke8a_ : (PRO163) (ASN223) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Bacillus sp. [TaxId: 129908]
d2wnsb_ : (LEU40) (GLU99) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1xrma_ : (GLY218) (PHE266) [view usage] : c.69.1.7 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Proline iminopeptidase-like |Tricorn interacting factor F1 |Thermoplasma acidophilum [TaxId: 2303]
d4lzab_ : (THR25) (ARG79) [view usage] : c.61.1.0 |PRTase-like |PRTase-like |automated matches |automated matches |Thermoanaerobacter pseudethanolicus [TaxId: 340099]
d4eu9a1 : (HIS113) (VAL168) [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Acetobacter aceti [TaxId: 435]
d4amua1 : (THR17) (GLY81) [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Mycoplasma penetrans [TaxId: 28227]
d3nglc2 : (SER117) (SER182) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermoplasma acidophilum [TaxId: 2303]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, c.2, i.1, c.26, c.92, c.66, c.80, c.124, c.23, c.37, c.55, c.89, c.86, c.87, c.31, c.78, d.108, c.111, c.61,
c.48, c.15