Tableau information
Concept source: d1vl2b1 amino acid (a.a.) range (TYR70)(SER141)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(TYR70) (LEU76) H1
(LEU87) (GLU107) H2
(GLN110) (ALA116) E3
(ASP122) (LEU133) H4
(LEU137) (SER141) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 133.1° H2
E3 -70.9° 154.3° E3
H4 95.4° -41.9° 163.3° H4
E5 -87.9° 130.0° -26.8° -168.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1o68b_ : (VAL143) (GLY201) [view usage] : c.1.12.8 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Ketopantoate hydroxymethyltransferase PanB |Ketopantoate hydroxymethyltransferase PanB |Neisseria meningitidis [TaxId: 487]
d2zska1 : (ASN44) (SER101) [view usage] : c.78.2.0 |ATC-like |Aspartate/glutamate racemase |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
d1ou0b_ : (SER104) (GLY164) [view usage] : c.23.17.1 |Flavodoxin-like |Precorrin-8X methylmutase CbiC/CobH |Precorrin-8X methylmutase CbiC/CobH |Precorrin-8x methylmutase related protein |Thermoplasma acidophilum [TaxId: 2303]
d1obbb1 : (GLN112) (GLY172) [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Alpha-glucosidase AglA |Thermotoga maritima [TaxId: 2336]
d3vgda2 : (TYR199) (ALA282) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Glycosyltrehalose trehalohydrolase, central domain |Sulfolobus solfataricus, km1 [TaxId: 2287]
d1c0na_ : (SER84) (PRO148) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |NifS-like protein/selenocysteine lyase |Escherichia coli [TaxId: 562]
d1t1ja_ : (VAL43) (LEU109) [view usage] : c.23.14.2 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |Hypothetical protein PA1492 |Hypothetical protein PA1492 |Pseudomonas aeruginosa [TaxId: 287]
d3ac0a1 : (GLY67) (HIS147) [view usage] : c.1.8.7 |TIM beta/alpha-barrel |(Trans)glycosidases |NagZ-like |Beta-glucosidase |Kluyveromyces marxianus [TaxId: 4911]
d1obba1 : (GLN112) (GLY172) [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Alpha-glucosidase AglA |Thermotoga maritima [TaxId: 2336]
d2ppye_ : (ASP71) (GLY129) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 235909]
d1j1za1 : (LEU61) (PRO141) [view usage] : c.26.2.1 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |N-type ATP pyrophosphatases |Argininosuccinate synthetase, N-terminal domain |Thermus thermophilus [TaxId: 274]
d3du7b1 : (GLY279) (ASP357) [view usage] : i.10.1.1 |Microtubule complexes |Microtubule complexes |Microtubule complexes |Tubulin:stathmin-like domain complex |Cow (Bos taurus) [TaxId: 9913]
d4lypa_ : (GLN28) (LEU113) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rhizomucor miehei [TaxId: 4839]
d2dx7a2 : (THR49) (ILE104) [view usage] : c.78.2.1 |ATC-like |Aspartate/glutamate racemase |Aspartate/glutamate racemase |Aspartate racemase |Pyrococcus horikoshii OT3 [TaxId: 70601]
d1yvpa2 : (LEU430) (ALA500) [view usage] : c.62.1.5 |vWA-like |vWA-like |RoRNP C-terminal domain-like |60-kda SS-A/Ro ribonucleoprotein, RoRNP |African clawed frog (Xenopus laevis) [TaxId: 8355]
d1gaja_ : (GLU127) (ILE209) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |MJ1267 |Methanococcus jannaschii [TaxId: 2190]
d3iacc_ : (ALA125) (PRO187) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Salmonella typhimurium [TaxId: 90371]
d1h1la_ : (PRO300) (ILE373) [view usage] : c.92.2.3 |Chelatase-like |"Helical backbone" metal receptor |Nitrogenase iron-molybdenum protein |Nitrogenase iron-molybdenum protein, alpha chain |Klebsiella pneumoniae [TaxId: 573]
d4v06b_ : (CYS236) (THR299) [view usage] : d.178.1.1 |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ef0a1 : (GLY19) (ASP78) [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d4ovja_ : (GLY256) (LEU302) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Alicyclobacillus acidocaldarius [TaxId: 521098]
d2hx1a_ : (SER58) (PRO120) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Cytophaga hutchinsonii [TaxId: 985]
d3hvma_ : (SER23) (LYS74) [view usage] : d.126.1.6 |Pentein, beta/alpha-propeller |Pentein |Porphyromonas-type peptidylarginine deiminase |Putative peptidyl-arginine deiminase |Helicobacter pylori J99 [TaxId: 85963]
d2cmua1 : (SER25) (LYS76) [view usage] : d.126.1.6 |Pentein, beta/alpha-propeller |Pentein |Porphyromonas-type peptidylarginine deiminase |Putative peptidyl-arginine deiminase |Helicobacter pylori J99 [TaxId: 85963]
d1k92a1 : (CYS72) (PRO155) [view usage] : c.26.2.1 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |N-type ATP pyrophosphatases |Argininosuccinate synthetase, N-terminal domain |Escherichia coli [TaxId: 562]
d2pk3a_ : (SER74) (ARG166) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Aneurinibacillus thermoaerophilus [TaxId: 143495]
d3tk2a_ : (ASP61) (THR119) [view usage] : d.178.1.1 |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Phenylalanine hydroxylase, PAH |Chromobacterium violaceum [TaxId: 536]
d3b9na_ : (ARG70) (PRO140) [view usage] : c.1.16.0 |TIM beta/alpha-barrel |Bacterial luciferase-like |automated matches |automated matches |Geobacillus thermodenitrificans [TaxId: 33940]
d1bf2a3 : (SER316) (GLU435) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Isoamylase, central domain |Pseudomonas amyloderamosa [TaxId: 32043]
d1t3ta5 : (ARG700) (SER780) [view usage] : d.79.4.1 |Bacillus chorismate mutase-like |PurM N-terminal domain-like |PurM N-terminal domain-like |FGAM synthase PurL, PurM-like module, N1 and N2 domains |Salmonella typhimurium [TaxId: 90371]
d3pdia_ : (GLY371) (ASN418) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Azotobacter vinelandii [TaxId: 322710]
d1j5sb_ : (ALA120) (PRO179) [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uronate isomerase TM0064 |Thermotoga maritima [TaxId: 2336]
d3hsyb_ : (ASN158) (ASN218) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Ionotropic glutamate receptor 2 (GluR2) amino-terminal domain (ATD) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3p83d_ : (ARG72) (HIS126) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d1m3ua_ : (SER143) (GLY203) [view usage] : c.1.12.8 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Ketopantoate hydroxymethyltransferase PanB |Ketopantoate hydroxymethyltransferase PanB |Escherichia coli [TaxId: 562]
d1c9ya1 : (HIS117) (ASN161) [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Ornithine transcarbamoylase |Human (Homo sapiens) [TaxId: 9606]
d1mlwa_ : (ARG191) (THR253) [view usage] : d.178.1.1 |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Tryptophan hydroxylase |Human (Homo sapiens) [TaxId: 9606]
d1uima_ : (ASN55) (LEU107) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Threonine synthase |Thermus thermophilus [TaxId: 274]
d2pz0a_ : (GLY91) (PHE152) [view usage] : c.1.18.0 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |automated matches |automated matches |Thermoanaerobacter tengcongensis [TaxId: 273068]
d1ou0c_ : (ASP101) (GLY164) [view usage] : c.23.17.1 |Flavodoxin-like |Precorrin-8X methylmutase CbiC/CobH |Precorrin-8X methylmutase CbiC/CobH |Precorrin-8x methylmutase related protein |Thermoplasma acidophilum [TaxId: 2303]
d3e2ta_ : (ARG192) (THR254) [view usage] : d.178.1.1 |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |Aromatic aminoacid monoxygenases, catalytic and oligomerization domains |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
d4mdha1 : (ARG92) (LEU154) [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Malate dehydrogenase |Pig (Sus scrofa) [TaxId: 9823]
d1assa_ : (LYS34) (ARG100) [view usage] : c.8.5.2 |The "swivelling" beta/beta/alpha domain |GroEL apical domain-like |Group II chaperonin (CCT, TRIC), apical domain |Thermosome, A-domain |Thermoplasma acidophilum, alpha chain [TaxId: 2303]
d1vl2b1 : (TYR70) (SER141) [view usage] : c.26.2.1 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |N-type ATP pyrophosphatases |Argininosuccinate synthetase, N-terminal domain |Thermotoga maritima [TaxId: 2336]
d4u7ja1 : (ARG65) (PRO144) [view usage] : c.26.2.0 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |automated matches |automated matches |Mycobacterium thermoresistibile [TaxId: 1078020]
d1ou0a_ : (TYR98) (GLY164) [view usage] : c.23.17.1 |Flavodoxin-like |Precorrin-8X methylmutase CbiC/CobH |Precorrin-8X methylmutase CbiC/CobH |Precorrin-8x methylmutase related protein |Thermoplasma acidophilum [TaxId: 2303]
d3vavh_ : (SER151) (GLY211) [view usage] : c.1.12.8 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Ketopantoate hydroxymethyltransferase PanB |automated matches |Burkholderia thailandensis [TaxId: 271848]
d2iw1a_ : (TYR103) (PRO166) [view usage] : c.87.1.8 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Glycosyl transferases group 1 |Lipopolysaccharide core biosynthesis protein RfaG |Escherichia coli [TaxId: 562]
d1u8ua_ : (GLY71) (PRO138) [view usage] : c.23.10.5 |Flavodoxin-like |SGNH hydrolase |TAP-like |Thioesterase I, TAP |Escherichia coli [TaxId: 562]
d1i39a_ : (ARG72) (GLU125) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |Class II ribonuclease H (RNase HII) |Archaeoglobus fulgidus [TaxId: 2234]
d3hyla2 : (GLY341) (THR397) [view usage] : c.36.1.0 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |automated matches |automated matches |Bacillus anthracis [TaxId: 261594]
d1t1jb_ : (VAL43) (LEU109) [view usage] : c.23.14.2 |Flavodoxin-like |N-(deoxy)ribosyltransferase-like |Hypothetical protein PA1492 |Hypothetical protein PA1492 |Pseudomonas aeruginosa [TaxId: 287]
d1g6ha_ : (GLU128) (HIS211) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |MJ1267 |Methanococcus jannaschii [TaxId: 2190]
d1r9ja1 : (GLY338) (SER394) [view usage] : c.36.1.6 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |TK-like Pyr module |Transketolase (TK), Pyr module |Leishmania mexicana mexicana [TaxId: 44270]
d4eknb1 : (LEU75) (GLY125) [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.94, c.2, c.108, c.79, c.26, c.92, c.93, c.14, c.23, c.37, c.36, d.178, c.55, c.87, c.62, d.126, c.78, c.8,
d.79, i.10