Tableau information
Concept source: d1ut5a2 amino acid (a.a.) range (ALA129)(PHE169)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA129) (LEU139) H1
(ILE140) (ASP145) H2
(ASP145) (SER151) E3
(ASP153) (LEU159) H4
(LYS163) (PHE169) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -65.8° H2
E3 176.3° 111.3° E3
H4 -21.4° -83.8° 162.3° H4
E5 144.9° 83.5° -31.4° -166.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1ut5a2 : (ALA129) (PHE169) [view usage] : c.120.1.2 |PIN domain-like |PIN domain-like |5' to 3' exonuclease catalytic domain |T5 5'-exonuclease |Bacteriophage T5 [TaxId: 10726]
d3ga5a_ : (LYS113) (LEU176) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Galactose/glucose-binding protein |Salmonella typhimurium, strain lt2 [TaxId: 90371]
d3ewla_ : (SER37) (ASN91) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacteroides fragilis [TaxId: 272559]
d3oxnb_ : (LEU247) (PRO281) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Vibrio parahaemolyticus [TaxId: 670]
d1yq2a5 : (PRO487) (GLU553) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Arthrobacter sp. c2-2 [TaxId: 192168]
d1f5za_ : (PHE170) (SER207) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |N-acetylneuraminate lyase |Haemophilus influenzae [TaxId: 727]
d3hlta_ : (THR74) (HIS144) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4jnza2 : (ILE265) (LYS329) [view usage] : c.1.23.2 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Proline dehydrohenase domain of bifunctional PutA protein |Proline dehydrohenase domain of bifunctional PutA protein |Escherichia coli K-12 [TaxId: 83333]
d1kohb_ : (ARG279) (GLY324) [view usage] : c.10.2.3 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |mRNA export factor tap |mRNA export factor tap |Human (Homo sapiens) [TaxId: 9606]
d1wpxa_ : (THR112) (SER171) [view usage] : c.69.1.5 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Serine carboxypeptidase-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4ifta_ : (SER72) (ASN146) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
d1a8ha2 : (LEU232) (GLY288) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Methionyl-tRNA synthetase (MetRS) |Thermus thermophilus [TaxId: 274]
d4jnya2 : (ALA266) (LYS329) [view usage] : c.1.23.2 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Proline dehydrohenase domain of bifunctional PutA protein |Proline dehydrohenase domain of bifunctional PutA protein |Escherichia coli K-12 [TaxId: 83333]
d1j7ga_ : (ARG39) (GLN123) [view usage] : c.110.1.1 |DTD-like |DTD-like |DTD-like |D-Tyr tRNAtyr deacylase, DTD |Haemophilus influenzae [TaxId: 727]
d1vjta1 : (TYR133) (CYS181) [view usage] : c.2.1.5 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |LDH N-terminal domain-like |Putative alpha-glucosidase TM0752 |Thermotoga maritima [TaxId: 2336]
d4n0qb_ : (ASP143) (PRO199) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Brucella melitensis [TaxId: 224914]
d1l8xb_ : (GLN286) (LEU339) [view usage] : c.92.1.1 |Chelatase-like |Chelatase |Ferrochelatase |Ferrochelatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d4bkma_ : (SER88) (GLY129) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1ivya_ : (ASP118) (GLY177) [view usage] : c.69.1.5 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Serine carboxypeptidase-like |Human 'protective protein', HPP |Human (Homo sapiens) [TaxId: 9606]
d4my5c_ : (THR152) (GLU206) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Streptococcus mutans [TaxId: 210007]
d2p7ha1 : (GLY53) (SER92) [view usage] : c.66.1.41 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |UbiE/COQ5-like |Hypothetical protein ECA1738 |Erwinia carotovora [TaxId: 554]
d1k77a_ : (GLU116) (THR179) [view usage] : c.1.15.5 |TIM beta/alpha-barrel |Xylose isomerase-like |Hypothetical protein YgbM (EC1530) |Hypothetical protein YgbM (EC1530) |Escherichia coli [TaxId: 562]
d1cpya_ : (THR112) (ASN176) [view usage] : c.69.1.5 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Serine carboxypeptidase-like |Serine carboxypeptidase II |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1lbqa_ : (ALA288) (LEU339) [view usage] : c.92.1.1 |Chelatase-like |Chelatase |Ferrochelatase |Ferrochelatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1exna2 : (ALA129) (SER168) [view usage] : c.120.1.2 |PIN domain-like |PIN domain-like |5' to 3' exonuclease catalytic domain |T5 5'-exonuclease |Bacteriophage T5 [TaxId: 10726]
d3ewlb_ : (SER37) (ASN91) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacteroides fragilis [TaxId: 272559]
d3n34a_ : (ALA213) (GLY265) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |automated matches |Plasmodium falciparum [TaxId: 36329]
d4ig4a_ : (SER72) (ASN146) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Geobacillus stearothermophilus [TaxId: 1422]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, c.67, c.69, c.94, c.2, c.108, c.26, c.92, c.66, c.93, c.47, c.120, c.110