Tableau information
Concept source: d1tu7a2 amino acid (a.a.) range (ALA34)(TYR74)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HHEEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA34) (ILE41) H1
(ILE41) (GLN46) H2
(PRO51) (GLY56) E3
(ASP57) (GLN62) E4
(GLN62) (TYR74) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
H2 -62.5° H2
E3 60.8° 72.4° E3
E4 -115.0° -87.4° 159.0° E4
H5 88.1° 58.1° 39.3° 124.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2oa7a2 : (THR34) (SER75) [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class pi GST |Mouse (Mus musculus) [TaxId: 10090]
d3o76a1 : (THR34) (ARG74) [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class pi GST |Mouse (Mus musculus) [TaxId: 10090]
d2h0ga1 : (THR179) (GLY229) [view usage] : c.47.1.9 |Thioredoxin fold |Thioredoxin-like |DsbC/DsbG C-terminal domain-like |Thiol:disulfide interchange protein DsbG, C-terminal domain |Escherichia coli [TaxId: 562]
d1hnaa2 : (ARG42) (HIS83) [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class mu GST |Human (Homo sapiens) [TaxId: 9606]
d3us3a1 : (ASP76) (LEU123) [view usage] : c.47.1.3 |Thioredoxin fold |Thioredoxin-like |Calsequestrin |Calsequestrin |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d1r4wa_ : (ALA148) (LEU210) [view usage] : c.47.1.13 |Thioredoxin fold |Thioredoxin-like |DsbA-like |Mitochondrial class kappa glutathione S-transferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1nm3b1 : (ILE201) (ALA241) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |C-terminal, Grx domain of Hybrid-Prx5 |Haemophilus influenzae [TaxId: 727]
d3idva2 : (ASP236) (SER283) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3taga2 : (ASN787) (TRP865) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
d4f0ba1 : (SER59) (HIS94) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Basidomycetes fungus (Phanerochaete chrysosporium) [TaxId: 5306]
d2l5la_ : (ASP77) (HIS131) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bacteroides vulgatus [TaxId: 435590]
d1glpa2 : (THR34) (SER75) [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class pi GST |Mouse (Mus musculus) [TaxId: 10090]
d1nm3a1 : (ILE201) (TYR239) [view usage] : c.47.1.1 |Thioredoxin fold |Thioredoxin-like |Thioltransferase |C-terminal, Grx domain of Hybrid-Prx5 |Haemophilus influenzae [TaxId: 727]
d2vsga_ : (GLU299) (ALA358) [view usage] : h.4.1.1 |Antiparallel coiled-coil |Variant surface glycoprotein (N-terminal domain) |Variant surface glycoprotein (N-terminal domain) |Variant surface glycoprotein (N-terminal domain) |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d2lv3a_ : (VAL73) (ASN114) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d3idva1 : (ASP121) (SER168) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2lkua_ : (ASN58) (GLY97) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Western balsam poplar (Populus trichocarpa) [TaxId: 3694]
d1gssa2 : (THR34) (THR73) [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class pi GST |Human (Homo sapiens) [TaxId: 9606]
d1g7oa2 : (LEU32) (LEU72) [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Glutaredoxin 2 |Escherichia coli [TaxId: 562]
d2remc_ : (GLN125) (ALA190) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Xylella fastidiosa [TaxId: 2371]
d1yzxa_ : (SER148) (GLY211) [view usage] : c.47.1.13 |Thioredoxin fold |Thioredoxin-like |DsbA-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1on4a_ : (SER108) (THR172) [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Thioredoxin-like protein Sco1 (YpmQ), soluble domain |Bacillus subtilis [TaxId: 1423]
d4ubsa_ : (PRO25) (ASP63) [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Streptomyces avermitilis [TaxId: 227882]
d4hnak_ : (ASP101) (ARG190) [view usage] : c.37.1.9 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Motor proteins |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4jrrc_ : (ALA157) (ALA217) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Legionella pneumophila [TaxId: 272624]
d2djka1 : (ASP61) (VAL114) [view usage] : c.47.1.2 |Thioredoxin fold |Thioredoxin-like |PDI-like |Protein disulfide isomerase, PDI |Fungus (Humicola insolens) [TaxId: 34413]
d4iq1c1 : (SER35) (TYR77) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Mannheimia haemolytica [TaxId: 272629]
d3hd5a_ : (ASP141) (GLY190) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Bordetella parapertussis [TaxId: 519]
d3uiwb_ : (HIS62) (GLY104) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Zebrafish (Danio rerio) [TaxId: 7955]
d2uzga1 : (CYS39) (THR99) [view usage] : g.44.1.5 |RING/U-box |RING/U-box |Zf-UBP |Ubiquitin carboxyl-terminal hydrolase 33, UBP33 |Human (Homo sapiens) [TaxId: 9606]
d1h0ha2 : (CYS54) (VAL99) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Tungsten containing formate dehydrogenase, large subunit |Desulfovibrio gigas [TaxId: 879]
d1mupa_ : (GLY11) (LEU44) [view usage] : b.60.1.1 |Lipocalins |Lipocalins |Retinol binding protein-like |Major urinary protein/alpha-2u-globulin |Mouse (Mus musculus) [TaxId: 10090]
d1l3la2 : (GLU90) (ARG163) [view usage] : d.110.5.1 |Profilin-like |Pheromone-binding domain of LuxR-like quorum-sensing transcription factors |Pheromone-binding domain of LuxR-like quorum-sensing transcription factors |Transcription factor TraR, N-terminal domain |Agrobacterium tumefaciens [TaxId: 358]
d3gtub2 : (ARG46) (ALA84) [view usage] : c.47.1.5 |Thioredoxin fold |Thioredoxin-like |Glutathione S-transferase (GST), N-terminal domain |Class mu GST |Human (Homo sapiens) [TaxId: 9606]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.81, a.104, c.37, c.47, b.60, d.110, h.4, g.44