Protein Concepts Dictionary

Tableau information

Concept source:  d2wrba2  amino acid (a.a.) range (ALA334)(ILE385)

nSSEs in this Concept: 5

String of secondary struct.elems. (SSEs) defining this concept: HHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ALA334)  (GLU340) H1
	  (TRP343)  (GLY349) H2
	  (TYR351)  (ASN357) E3
	  (GLY362)  (GLU368) E4
	  (GLU368)  (ILE385) H5

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                 
H2      140.3°   H2                          
E3       20.0°  120.7°   E3                   
E4      150.4°  -38.8°  142.8°   E4            
H5     -146.9°  -72.6° -163.8°  -53.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4mhib_ :     (ALA5)   (ASN60)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
 d3us8b_ :    (ASP79)  (ALA141)   [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Sinorhizobium meliloti [TaxId: 266834]
 d2wrbb2 :   (ALA334)  (ILE385)   [view usage] : h.3.1.0 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |automated matches |automated matches |Influenza A virus [TaxId: 11320]
 d2wrba2 :   (ALA334)  (ILE385)   [view usage] : h.3.1.0 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |automated matches |automated matches |Influenza A virus [TaxId: 11320]
 d1ruzi_ :   (ALA505)  (MET559)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
 d3sm5b_ :   (ALA505)  (ILE556)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
 d4jund_ :     (ALA5)   (ASN60)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza a virus [TaxId: 365085]
 d3s11d_ :     (ALA5)   (ASN60)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza A virus [TaxId: 11320]
 d4fqib_ :     (ALA5)   (ASN53)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |Influenza A virus, different strains [TaxId: 11320]
 d4cqvb_ :     (ALA5)   (GLN62)   [view usage] : h.3.1.1 |Stalk segment of viral fusion proteins |Influenza hemagglutinin (stalk) |Influenza hemagglutinin (stalk) |automated matches |Influenza a virus (a/turkey/turkey/1/2005(h5n1)) [TaxId: 375457]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.77,     h.3