Protein Concepts Dictionary

Tableau information

Concept source:  d3m5ca2  amino acid (a.a.) range (GLU280)(VAL334)

nSSEs in this Concept: 5

String of secondary struct.elems. (SSEs) defining this concept: HEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLU280)  (THR286) H1
	  (GLY289)  (LEU295) E2
	  (ARG298)  (ALA303) H3
	  (THR304)  (SER310) H4
	  (ALA315)  (VAL334) H5

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                 
E2      131.7°   E2                          
H3       44.3°  137.3°   H3                   
H4      -44.2° -103.5°   88.5°   H4            
H5       67.8°  -63.9°   92.1°   56.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1js1x2 :   (ASP260)  (LEU317)   [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Transcarbamylase-like protein |Bacteroides fragilis [TaxId: 817]
 d3m4na2 :   (ASP279)  (VAL334)   [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Xanthomonas campestris [TaxId: 340]
 d2fg6c2 :   (ASP260)  (LEU317)   [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Transcarbamylase-like protein |Bacteroides fragilis [TaxId: 817]
 d1a1sa2 :   (ASN253)  (ILE312)   [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Ornithine transcarbamoylase |Pyrococcus furiosus [TaxId: 2261]
 d3m5da2 :   (ASP279)  (LEU333)   [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Xanthomonas campestris [TaxId: 340]
 d4oh7a2 :   (ASN249)  (LEU305)   [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Brucella melitensis [TaxId: 546272]
 d4nf2a2 :   (ASN253)  (ASN311)   [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Bacillus anthracis [TaxId: 261594]
 d3m5ca2 :   (GLU280)  (VAL334)   [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Xanthomonas campestris [TaxId: 340]
 d2i6ua2 :   (SER249)  (SER307)   [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d1js1y2 :   (ASP260)  (LEU317)   [view usage] : c.78.1.1 |ATC-like |Aspartate/ornithine carbamoyltransferase |Aspartate/ornithine carbamoyltransferase |Transcarbamylase-like protein |Bacteroides fragilis [TaxId: 817]
 d4a8ta2 :   (GLN254)  (ARG297)   [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Enterococcus faecalis [TaxId: 1351]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.78