Tableau information
Concept source: d2ayqb_ amino acid (a.a.) range (THR163)(LEU220)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEHHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR163) (ARG181) H1
(LYS183) (ASP189) E2
(LEU194) (GLU206) H3
(THR207) (PRO212) H4
(GLU215) (LEU220) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 149.2° E2
H3 -47.9° -159.6° H3
H4 -19.1° -167.2° -29.0° H4
E5 129.7° -21.0° -174.9° 148.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2ozlb1 : (SER58) (PRO117) [view usage] : c.36.1.7 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase Pyr module |E1-beta subunit of pyruvate dehydrogenase, Pyr module |Human (Homo sapiens) [TaxId: 9606]
d2yvwa_ : (ARG239) (GLU283) [view usage] : d.68.2.0 |IF3-like |EPT/RTPC-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 224324]
d4gwoa_ : (ALA227) (ASP260) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Salmonella enterica [TaxId: 99287]
d4a4da_ : (LYS144) (GLY203) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ybha3 : (GLY516) (LEU563) [view usage] : c.36.1.9 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Pyruvate oxidase and decarboxylase PP module |Acetohydroxyacid synthase catalytic subunit |Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]
d3uk0a_ : (ILE142) (ALA196) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 316057]
d2g8ia_ : (THR104) (LYS180) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |BH0863-like Ribonuclease H |Bacillus halodurans [TaxId: 86665]
d1ni4b1 : (SER58) (PRO117) [view usage] : c.36.1.7 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase Pyr module |E1-beta subunit of pyruvate dehydrogenase, Pyr module |Human (Homo sapiens) [TaxId: 9606]
d1pz1a_ : (GLU33) (THR85) [view usage] : c.1.7.1 |TIM beta/alpha-barrel |NAD(P)-linked oxidoreductase |Aldo-keto reductases (NADP) |Putative oxidoreductase YhdN |Bacillus subtilis [TaxId: 1423]
d4jbea_ : (ASN130) (ARG185) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Saccharomonospora viridis [TaxId: 471857]
d3c6qa_ : (ASN105) (CYS163) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d2ihua2 : (THR90) (GLU138) [view usage] : c.36.1.5 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Pyruvate oxidase and decarboxylase Pyr module |Carboxyethylarginine synthase |Streptomyces clavuligerus [TaxId: 1901]
d3vlwa_ : (ARG253) (PRO292) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Sphingomonas sp. [TaxId: 90322]
d3afna_ : (MET114) (THR196) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Sphingomonas sp. [TaxId: 90322]
d3lupa_ : (SER65) (ASP116) [view usage] : c.119.1.0 |DAK1/DegV-like |DAK1/DegV-like |automated matches |automated matches |Streptococcus agalactiae [TaxId: 208435]
d3ct7a_ : (PRO46) (HIS87) [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Escherichia coli [TaxId: 562]
d2c8jb_ : (PHE91) (ILE143) [view usage] : c.92.1.1 |Chelatase-like |Chelatase |Ferrochelatase |automated matches |Bacillus anthracis [TaxId: 198094]
d3a6ja_ : (ASP91) (SER152) [view usage] : c.125.1.1 |Creatininase |Creatininase |Creatininase |Creatininase |Pseudomonas putida [TaxId: 303]
d1um9b1 : (SER59) (PRO118) [view usage] : c.36.1.7 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Branched-chain alpha-keto acid dehydrogenase Pyr module |Branched-chain alpha-keto acid dehydrogenase, Pyr module |Thermus thermophilus [TaxId: 274]
d2g8fa1 : (THR104) (LYS180) [view usage] : c.55.3.1 |Ribonuclease H-like motif |Ribonuclease H-like |Ribonuclease H |BH0863-like Ribonuclease H |Bacillus halodurans [TaxId: 86665]
d3wmxa_ : (MET96) (ARG170) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Ralstonia eutropha [TaxId: 381666]
d2hs0a1 : (GLY83) (SER141) [view usage] : d.79.4.1 |Bacillus chorismate mutase-like |PurM N-terminal domain-like |PurM N-terminal domain-like |Phosphoribosylformylglycinamidine synthase II, domains 1 and 3 |Thermotoga maritima [TaxId: 2336]
d1l8xb_ : (LEU141) (ARG198) [view usage] : c.92.1.1 |Chelatase-like |Chelatase |Ferrochelatase |Ferrochelatase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2o2sa_ : (TYR155) (PRO226) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Toxoplasma gondii [TaxId: 383379]
d2ghqa_ : (HIS134) (ARG178) [view usage] : c.108.1.16 |HAD-like |HAD-like |NLI interacting factor-like phosphatase |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ayqb_ : (THR163) (LEU220) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Bacillus coagulans [TaxId: 1398]
d2h3hb_ : (ASN105) (ASP162) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Thermotoga maritima [TaxId: 2336]
d2g3wa1 : (ASP88) (GLU133) [view usage] : c.52.1.33 |Restriction endonuclease-like |Restriction endonuclease-like |YaeQ-like |Hypothetical protein XAC2396 |Xanthomonas axonopodis pv. citri [TaxId: 92829]
d1hfel1 : (SER202) (THR259) [view usage] : c.96.1.1 |Fe-only hydrogenase |Fe-only hydrogenase |Fe-only hydrogenase |Fe-only hydrogenase larger subunit, C-domain |Desulfovibrio desulfuricans [TaxId: 876]
d1fvga_ : (SER127) (GLY196) [view usage] : d.58.28.1 |Ferredoxin-like |Peptide methionine sulfoxide reductase |Peptide methionine sulfoxide reductase |Peptide methionine sulfoxide reductase |Cow (Bos taurus) [TaxId: 9913]
d2c8ja_ : (PHE91) (SER145) [view usage] : c.92.1.1 |Chelatase-like |Chelatase |Ferrochelatase |automated matches |Bacillus anthracis [TaxId: 198094]
d3miza_ : (ASP160) (MSE219) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhizobium etli [TaxId: 347834]
d1t8qd_ : (ILE185) (ALA237) [view usage] : c.1.18.3 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Glycerophosphoryl diester phosphodiesterase |Glycerophosphodiester phosphodiesterase GlpQ |Escherichia coli [TaxId: 562]
d1do8a2 : (GLN229) (ASP279) [view usage] : c.58.1.3 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |Malic enzyme N-domain |Mitochondrial NAD(P)-dependent malic enzyme |Human (Homo sapiens) [TaxId: 9606]
d2aw5b1 : (GLY218) (ASP269) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2iv0a_ : (PHE197) (ASP273) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |automated matches |Archaeoglobus fulgidus [TaxId: 2234]
d3qvmb_ : (LEU80) (CYS129) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Oleispira antarctica [TaxId: 188908]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, c.94, d.68, c.2, d.58, c.108, c.82, c.92, c.77, c.93, c.37, c.36, c.55, d.79, c.52, c.125, c.58, c.119, c.96