Tableau information
Concept source: d4hl7b2 amino acid (a.a.) range (SER247)(SER295)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEHHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(SER247) (PHE259) H1
(LEU263) (ASP269) E2
(ILE273) (ASP279) H3
(ARG282) (TYR288) H4
(ASP289) (SER295) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 166.8° E2
H3 -56.0° 136.6° H3
H4 43.1° -124.5° 98.9° H4
E5 136.0° -30.9° 164.8° 94.3°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4n6fa_ : (SER35) (THR84) [view usage] : c.1.31.0 |TIM beta/alpha-barrel |ThiG-like |automated matches |automated matches |Amycolatopsis orientalis [TaxId: 797057]
d1yqya1 : (LYS552) (PHE631) [view usage] : d.92.1.14 |Zincin-like |Metalloproteases ("zincins"), catalytic domain |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax toxin lethal factor, N- and C-terminal domains |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d2a5yc1 : (TYR135) (LYS191) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |CED-4, NB-ARC domain |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d3vd5a3 : (PRO434) (GLY488) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Escherichia coli [TaxId: 562]
d2xy8a_ : (ASP84) (LEU131) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d2d5ra1 : (GLU132) (VAL195) [view usage] : c.55.3.9 |Ribonuclease H-like motif |Ribonuclease H-like |CAF1-like ribonuclease |CCR4-NOT transcription complex subunit 7, CAF1 |Human (Homo sapiens) [TaxId: 9606]
d1v6sa_ : (PRO322) (GLY370) [view usage] : c.86.1.1 |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Phosphoglycerate kinase |Thermus thermophilus [TaxId: 274]
d4rkqd_ : (THR229) (ASP282) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Arthrobacter sp. [TaxId: 290399]
d3cg3a_ : (SER70) (ILE115) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 53953]
d2fepa_ : (ASP161) (ASP221) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1un9a4 : (ASN232) (GLY290) [view usage] : c.119.1.2 |DAK1/DegV-like |DAK1/DegV-like |DAK1 |Dihydroxyacetone kinase |Citrobacter freundii [TaxId: 546]
d4ovsa_ : (VAL193) (LEU226) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Sulfurospirillum deleyianum [TaxId: 525898]
d4qp0a_ : (ASN135) (VAL217) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Rhizomucor miehei [TaxId: 4839]
d1n4aa_ : (GLU180) (THR218) [view usage] : c.92.2.2 |Chelatase-like |"Helical backbone" metal receptor |TroA-like |Vitamin B12 binding protein BtuF |Escherichia coli [TaxId: 562]
d4ohfb_ : (GLU190) (LEU244) [view usage] : c.108.1.23 |HAD-like |HAD-like |5' nucleotidase-like |Cytosolic IMP-GMP specific 5'-nucleotidase |Legionella pneumophila [TaxId: 272624]
d3dbic_ : (THR225) (ASP278) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4g63a_ : (GLU190) (LEU244) [view usage] : c.108.1.23 |HAD-like |HAD-like |5' nucleotidase-like |Cytosolic IMP-GMP specific 5'-nucleotidase |Legionella pneumophila [TaxId: 272624]
d1j53a_ : (THR78) (LEU131) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III |Escherichia coli [TaxId: 562]
d2idoc_ : (ALA83) (LEU131) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d1eyya_ : (VAL391) (ASN436) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Vibrio harveyi [TaxId: 669]
d1sxjc2 : (ASN124) (PRO168) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Replication factor C3 |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2hszb_ : (VAL100) (GLY144) [view usage] : c.108.1.6 |HAD-like |HAD-like |beta-Phosphoglucomutase-like |automated matches |Haemophilus somnus [TaxId: 205914]
d4erib_ : (ASP59) (GLN124) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
d3v9ga_ : (TYR463) (ASN507) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3muy13 : (PRO434) (GLY488) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4drxb2 : (THR287) (ASP357) [view usage] : d.79.2.1 |Bacillus chorismate mutase-like |Tubulin C-terminal domain-like |Tubulin, C-terminal domain |automated matches |Sheep (Ovis aries) [TaxId: 9940]
d3dv2b_ : (THR85) (VAL131) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Nicotinamide mononucleotide (NMN) adenylyltransferase |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d2oogd_ : (THR152) (PHE208) [view usage] : c.1.18.0 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |automated matches |automated matches |Staphylococcus aureus [TaxId: 158879]
d2vx7a_ : (SER308) (TRP373) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId: 155077]
d1maba3 : (GLN186) (SER233) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Central domain of alpha subunit of F1 ATP synthase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4ohfd_ : (GLU190) (LEU244) [view usage] : c.108.1.23 |HAD-like |HAD-like |5' nucleotidase-like |Cytosolic IMP-GMP specific 5'-nucleotidase |Legionella pneumophila [TaxId: 272624]
d1eyyb_ : (VAL391) (ASN436) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Aldehyde reductase (dehydrogenase), ALDH |Vibrio harveyi [TaxId: 669]
d1up3a_ : (SER215) (ASN274) [view usage] : c.6.1.1 |7-stranded beta/alpha barrel |Glycosyl hydrolases family 6, cellulases |Glycosyl hydrolases family 6, cellulases |Putative cellulase Rv0062 (Cel6, CelA1) |Mycobacterium tuberculosis [TaxId: 1773]
d2cexa_ : (VAL173) (MET206) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Sialic acid-binding protein SiaP |Haemophilus influenzae [TaxId: 727]
d4mwoa_ : (GLY110) (THR162) [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4hl7b2 : (SER247) (SER295) [view usage] : c.1.17.0 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d1bgla5 : (PRO434) (GLY488) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Escherichia coli [TaxId: 562]
d4muma1 : (ALA111) (THR162) [view usage] : c.108.1.8 |HAD-like |HAD-like |5'(3')-deoxyribonucleotidase (dNT-2) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4f82b_ : (HIS66) (SER109) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d4hl7a2 : (SER247) (SER295) [view usage] : c.1.17.0 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d2onke1 : (GLY69) (MET109) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Molybdate-binding protein, ModA |Archaeoglobus fulgidus [TaxId: 2234]
d4ifkb_ : (PRO60) (ALA119) [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD |Pseudomonas fluorescens [TaxId: 294]
d2bzga1 : (ARG163) (GLU218) [view usage] : c.66.1.36 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Thiopurine S-methyltransferase |Thiopurine S-methyltransferase |Human (Homo sapiens) [TaxId: 9606]
d1nofa2 : (SER178) (TYR232) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Glycosyl hydrolase family 5 xylanase, catalytic domain |Erwinia chrysanthemi [TaxId: 556]
d3v9ha_ : (TYR463) (ASN507) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3brqb_ : (THR181) (ASP234) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4af1a2 : (ARG219) (SER258) [view usage] : c.55.4.0 |Ribonuclease H-like motif |Translational machinery components |automated matches |automated matches |Halobacterium salinarum [TaxId: 478009]
d1jyna5 : (THR441) (GLY488) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Escherichia coli [TaxId: 562]
d3vd3a3 : (ASP429) (GLY488) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Escherichia coli [TaxId: 562]
d4f82a_ : (HIS66) (SER109) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
d1iqpa2 : (THR123) (PRO168) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Replication factor C |Pyrococcus furiosus [TaxId: 2261]
d2onkj_ : (GLY69) (MET109) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Molybdate-binding protein, ModA |Archaeoglobus fulgidus [TaxId: 2234]
d1zvva2 : (ASP224) (ASP275) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Glucose-resistance amylase regulator CcpA, C-terminal domain |Bacillus megaterium [TaxId: 1404]
d3v9gc_ : (TYR463) (ASN507) [view usage] : c.82.1.0 |ALDH-like |ALDH-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3dbib_ : (THR225) (ASP278) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2guia_ : (THR78) (LEU131) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Escherichia coli [TaxId: 562]
d3hbja_ : (PRO287) (ALA333) [view usage] : c.87.1.0 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |automated matches |automated matches |Medicago truncatula [TaxId: 3880]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.94, c.6, c.108, c.82, c.26, c.92, c.66, d.92, c.93, c.37, c.47, c.55, c.86, c.87, d.79, c.119