Tableau information
Concept source: d4g1ka_ amino acid (a.a.) range (ALA84)(GLY132)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEHHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA84) (GLU89) H1
(ALA93) (GLY98) E2
(HIS99) (GLY107) H3
(SER109) (GLY124) H4
(THR126) (GLY132) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 150.5° E2
H3 141.5° -47.9° H3
H4 -34.7° 174.7° 128.5° H4
E5 131.9° -20.4° -66.6° -164.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±10.7° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1qzma_ : (THR494) (GLY572) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |ATPase domain of protease Lon (La) |Escherichia coli [TaxId: 562]
d1kiaa_ : (LEU120) (HIS174) [view usage] : c.66.1.5 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Glycine N-methyltransferase |Glycine N-methyltransferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1uwra_ : (THR177) (PRO269) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |beta-Glycosidase |Sulfolobus solfataricus [TaxId: 2287]
d1mt0a_ : (SER607) (ALA661) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |Haemolysin B ATP-binding protein |Escherichia coli [TaxId: 562]
d2veia_ : (ASN69) (GLY128) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d4hhpa_ : (LEU81) (GLY129) [view usage] : c.1.1.0 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |automated matches |automated matches |Trypanosoma cruzi [TaxId: 5693]
d2wbka3 : (PRO522) (PHE561) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
d3krsa_ : (CYS82) (GLY130) [view usage] : c.1.1.0 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |automated matches |automated matches |Cryptosporidium parvum [TaxId: 353152]
d2reqa1 : (ALA170) (GLY242) [view usage] : c.1.19.1 |TIM beta/alpha-barrel |Cobalamin (vitamin B12)-dependent enzymes |Methylmalonyl-CoA mutase, N-terminal (CoA-binding) domain |Methylmalonyl-CoA mutase alpha subunit, domain 1 |Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
d4rsha_ : (ARG103) (LEU156) [view usage] : c.23.10.0 |Flavodoxin-like |SGNH hydrolase |automated matches |automated matches |Desulfitobacterium hafniense [TaxId: 272564]
d3ahxc_ : (VAL139) (ILE219) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |Beta-glucosidase A |Clostridium cellulovorans [TaxId: 1493]
d1u7xa_ : (HIS42) (SER106) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tyrosyl-tRNA synthetase (TyrRS) |Methanococcus jannaschii [TaxId: 2190]
d1bhja_ : (THR119) (HIS174) [view usage] : c.66.1.5 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Glycine N-methyltransferase |Glycine N-methyltransferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3edea2 : (GLU387) (TYR450) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Flavobacterium sp. [TaxId: 197856]
d1hfbf_ : (ALA259) (GLU316) [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) |Baker's yeast (Saccharomyces cerevisiae), tyrosine-regulated isozyme [TaxId: 4932]
d1hfbg_ : (ASP258) (GLU316) [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) |Baker's yeast (Saccharomyces cerevisiae), tyrosine-regulated isozyme [TaxId: 4932]
d2guya2 : (MET269) (TYR328) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Fungal alpha-amylases |Aspergillus oryzae, Taka-amylase [TaxId: 5062]
d1d2ga_ : (THR119) (HIS174) [view usage] : c.66.1.5 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Glycine N-methyltransferase |Glycine N-methyltransferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d3w27a_ : (ASP32) (THR86) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Thermoanaerobacterium saccharolyticum [TaxId: 1094508]
d3s9ya_ : (GLU78) (MET137) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |automated matches |Plasmodium falciparum [TaxId: 36329]
d4cbra_ : (THR135) (SER184) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2uwfa_ : (ARG43) (THR96) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Bacillus halodurans [TaxId: 86665]
d3qsta_ : (VAL79) (GLU128) [view usage] : c.1.1.0 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |automated matches |automated matches |Trichomonas vaginalis [TaxId: 5722]
d1ci1b_ : (LEU81) (GLY129) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Trypanosoma cruzi [TaxId: 5693]
d1h3ga3 : (GLU387) (TYR450) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclomaltodextrinase, central domain |Flavobacterium sp. 92 [TaxId: 197856]
d1ytda1 : (SER120) (GLY165) [view usage] : c.1.17.1 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |NadC C-terminal domain-like |Nicotinate phosphoribosyltransferase Ta1145 |Thermoplasma acidophilum [TaxId: 2303]
d2yy5b_ : (LEU27) (LEU80) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Mycoplasma pneumoniae [TaxId: 272634]
d3edda2 : (GLU387) (TYR450) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Flavobacterium sp. [TaxId: 197856]
d2aaaa2 : (ILE269) (TYR328) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Fungal alpha-amylases |Aspergillus niger, acid amylase [TaxId: 5061]
d3vm7a1 : (TRP289) (TYR347) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Malbranchea cinnamomea [TaxId: 5041]
d1wzaa2 : (PHE298) (TYR362) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Halothermothrix orenii [TaxId: 31909]
d2r8wb_ : (ASP53) (ALA112) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 176299]
d2vqua5 : (PRO522) (PHE561) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Five-domain beta-mannosidase, domain 3 |Bacteroides thetaiotaomicron [TaxId: 818]
d1x3ma2 : (ASN59) (PHE142) [view usage] : c.55.1.2 |Ribonuclease H-like motif |Actin-like ATPase domain |Acetokinase-like |Propionate kinase |Salmonella typhimurium [TaxId: 90371]
d1iupa_ : (SER205) (ARG249) [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |Meta-cleavage product hydrolase CumD |Pseudomonas fluorescens [TaxId: 294]
d1f3oa_ : (SER147) (THR203) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |MJ0796 |Methanococcus jannaschii [TaxId: 2190]
d1z6ka_ : (CYS119) (ALA180) [view usage] : c.1.12.5 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |HpcH/HpaI aldolase |Citrate lyase, beta subunit |Mycobacterium tuberculosis [TaxId: 1773]
d1nbia_ : (LEU120) (HIS174) [view usage] : c.66.1.5 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Glycine N-methyltransferase |Glycine N-methyltransferase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d4lnca_ : (THR195) (ASN247) [view usage] : c.1.15.3 |TIM beta/alpha-barrel |Xylose isomerase-like |Xylose isomerase |D-xylose isomerase |Streptomyces rubiginosus [TaxId: 1929]
d4h0ob1 : (HIS61) (ASP142) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Entamoeba (Entamoeba histolytica) [TaxId: 5759]
d3c9fa2 : (GLY95) (ASN142) [view usage] : d.159.1.2 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain |Yeast (Candida albicans) [TaxId: 5476]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, d.159, c.26, c.66, c.23, c.37, c.55