Tableau information
Concept source: d2pkwa1 amino acid (a.a.) range (ALA157)(LYS218)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEHHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA157) (ILE161) H1
(GLN166) (PRO172) E2
(LYS184) (VAL194) H3
(ASP199) (LEU210) H4
(ARG214) (LYS218) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 151.5° E2
H3 119.0° -89.5° H3
H4 -24.2° 174.5° 94.9° H4
E5 133.2° -18.9° -107.1° 155.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4c6ua1 : (TYR82) (SER169) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d2aa4a1 : (GLN53) (ASN104) [view usage] : c.55.1.10 |Ribonuclease H-like motif |Actin-like ATPase domain |ROK |N-acetylmannosamine kinase NanK |Escherichia coli [TaxId: 562]
d1rhca_ : (PHE89) (LYS149) [view usage] : c.1.16.3 |TIM beta/alpha-barrel |Bacterial luciferase-like |F420 dependent oxidoreductases |Coenzyme F420 dependent secondary alcohol dehydrogenase |Methanoculleus thermophilicus [TaxId: 2200]
d1fo1a1 : (PRO206) (LEU272) [view usage] : c.10.2.3 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |mRNA export factor tap |mRNA export factor tap |Human (Homo sapiens) [TaxId: 9606]
d1rd5a_ : (LEU31) (TYR102) [view usage] : c.1.2.4 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Tryptophan biosynthesis enzymes |Trp synthase alpha-subunit |Maize (Zea mays) [TaxId: 4577]
d1rv8b_ : (ASN154) (GLY209) [view usage] : c.1.10.2 |TIM beta/alpha-barrel |Aldolase |Class II FBP aldolase |Fructose-bisphosphate aldolase (FBP aldolase) |Thermus aquaticus [TaxId: 271]
d4jnza2 : (CYS410) (THR486) [view usage] : c.1.23.2 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Proline dehydrohenase domain of bifunctional PutA protein |Proline dehydrohenase domain of bifunctional PutA protein |Escherichia coli K-12 [TaxId: 83333]
d1oida2 : (VAL63) (ASN116) [view usage] : d.159.1.2 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain |5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain |Escherichia coli [TaxId: 562]
d2pkwa1 : (ALA157) (LYS218) [view usage] : c.66.1.55 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |YhiQ-like |Hypothetical protein YhiQ |Salmonella typhimurium [TaxId: 90371]
d4amua2 : (ASP221) (CYS276) [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Mycoplasma penetrans [TaxId: 28227]
d3scna_ : (SER11) (SER88) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Oryza sativa [TaxId: 39947]
d1fo1b_ : (LYS205) (LEU272) [view usage] : c.10.2.3 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |mRNA export factor tap |mRNA export factor tap |Human (Homo sapiens) [TaxId: 9606]
d1tiwa2 : (CYS410) (THR486) [view usage] : c.1.23.2 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Proline dehydrohenase domain of bifunctional PutA protein |Proline dehydrohenase domain of bifunctional PutA protein |Escherichia coli [TaxId: 562]
d2hsja1 : (PRO100) (VAL172) [view usage] : c.23.10.3 |Flavodoxin-like |SGNH hydrolase |Acetylhydrolase |Uncharacterized protein SP1450 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3ahva_ : (SER11) (SER88) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Oryza sativa [TaxId: 39947]
d4jiea_ : (SER14) (SER91) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Oryza sativa [TaxId: 39946]
d2hsjb_ : (PRO100) (VAL172) [view usage] : c.23.10.3 |Flavodoxin-like |SGNH hydrolase |Acetylhydrolase |Uncharacterized protein SP1450 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d4jnya2 : (CYS410) (THR486) [view usage] : c.1.23.2 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Proline dehydrohenase domain of bifunctional PutA protein |Proline dehydrohenase domain of bifunctional PutA protein |Escherichia coli K-12 [TaxId: 83333]
d1sqfa2 : (PRO307) (CYS375) [view usage] : c.66.1.38 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |NOL1/NOP2/sun |Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain |Escherichia coli [TaxId: 562]
d3e2qa2 : (CYS410) (THR486) [view usage] : c.1.23.2 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Proline dehydrohenase domain of bifunctional PutA protein |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1we5a4 : (ASN391) (ARG466) [view usage] : c.1.8.13 |TIM beta/alpha-barrel |(Trans)glycosidases |YicI catalytic domain-like |Putative glucosidase YicI, domain 2 |Escherichia coli [TaxId: 562]
d3rw7d_ : (PRO206) (LEU272) [view usage] : c.10.2.3 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |mRNA export factor tap |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1nzda_ : (VAL243) (ASP283) [view usage] : c.87.1.1 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |beta-Glucosyltransferase (DNA-modifying) |beta-Glucosyltransferase (DNA-modifying) |Bacteriophage T4 [TaxId: 10665]
d3scpa_ : (SER11) (SER88) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Oryza sativa [TaxId: 39947]
d3scva_ : (SER11) (SER88) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Oryza sativa [TaxId: 39947]
d2wcua_ : (PRO56) (GLU115) [view usage] : c.133.1.0 |RbsD-like |RbsD-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1bf2a3 : (SER212) (ASN296) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Isoamylase, central domain |Pseudomonas amyloderamosa [TaxId: 32043]
d1z69a_ : (PRO70) (ASP133) [view usage] : c.1.16.0 |TIM beta/alpha-barrel |Bacterial luciferase-like |automated matches |automated matches |Methanosarcina barkeri [TaxId: 2208]
d2yvta1 : (ARG158) (HIS220) [view usage] : d.159.1.6 |Metallo-dependent phosphatases |Metallo-dependent phosphatases |TT1561-like |Uncharacterized protein Aq_1956 |Aquifex aeolicus [TaxId: 63363]
d1wzaa2 : (PRO200) (TRP262) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Halothermothrix orenii [TaxId: 31909]
d1koob_ : (GLN208) (ASN274) [view usage] : c.10.2.3 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |mRNA export factor tap |mRNA export factor tap |Human (Homo sapiens) [TaxId: 9606]
d1r30a_ : (THR198) (SER262) [view usage] : c.1.28.1 |TIM beta/alpha-barrel |Radical SAM enzymes |Biotin synthase |Biotin synthase |Escherichia coli [TaxId: 562]
d3scwa_ : (SER11) (SER88) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Oryza sativa [TaxId: 39947]
d1f07a_ : (PRO70) (ALA152) [view usage] : c.1.16.3 |TIM beta/alpha-barrel |Bacterial luciferase-like |F420 dependent oxidoreductases |Coenzyme F420 dependent tetrahydromethanopterin reductase |Methanobacterium thermoautotrophicum [TaxId: 145262]
d2c0ha1 : (THR145) (TRP240) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |endo-1,4-beta-mannosidase |Blue mussel (Mytilus edulis) [TaxId: 6550]
d2fjka_ : (HIS191) (ASP253) [view usage] : c.1.10.2 |TIM beta/alpha-barrel |Aldolase |Class II FBP aldolase |automated matches |Thermus caldophilus [TaxId: 272]
d1r30b_ : (THR198) (SER262) [view usage] : c.1.28.1 |TIM beta/alpha-barrel |Radical SAM enzymes |Biotin synthase |Biotin synthase |Escherichia coli [TaxId: 562]
d1t8ha_ : (HIS155) (ARG241) [view usage] : d.194.1.2 |CNF1/YfiH-like putative cysteine hydrolases |CNF1/YfiH-like putative cysteine hydrolases |YfiH-like |Hypothetical protein YlmD |Bacillus stearothermophilus [TaxId: 1422]
d4m81a_ : (GLY278) (SER364) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d1a05a_ : (PRO55) (GLN108) [view usage] : c.77.1.1 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Dimeric isocitrate & isopropylmalate dehydrogenases |3-isopropylmalate dehydrogenase, IPMDH |Thiobacillus ferrooxidans [TaxId: 920]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, d.159, c.66, c.77, c.23, c.55, c.95, d.194, c.87, c.78, c.133