Tableau information
Concept source: d4nbub_ amino acid (a.a.) range (THR119)(PHE190)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEHHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR119) (GLY136) H1
(GLY138) (THR143) E2
(SER145) (TYR150) H3
(GLN155) (GLU175) H4
(GLY180) (PHE190) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 161.9° E2
H3 -103.7° 76.2° H3
H4 -17.4° -159.4° -87.4° H4
E5 147.7° -17.7° -90.3° -156.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2uyha_ : (ASP95) (VAL151) [view usage] : c.66.1.26 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |C5 cytosine-specific DNA methylase, DCM |automated matches |Haemophilus haemolyticus [TaxId: 726]
d3rihc_ : (LEU140) (ASN202) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d1e0va_ : (LEU5) (ALA43) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Streptomyces lividans [TaxId: 1916]
d2dg2a_ : (PRO143) (ASP188) [view usage] : c.104.1.0 |YjeF N-terminal domain-like |YjeF N-terminal domain-like |automated matches |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1k4kd_ : (THR85) (ARG133) [view usage] : c.26.1.3 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Adenylyltransferase |Nicotinamide mononucleotide (NMN) adenylyltransferase |Escherichia coli [TaxId: 562]
d1ta3b_ : (SER2) (PRO42) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Emericella nidulans (Aspergillus nidulans) [TaxId: 162425]
d4rgba_ : (LEU141) (ASN218) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium avium [TaxId: 243243]
d2fuea_ : (ASP197) (VAL240) [view usage] : c.108.1.10 |HAD-like |HAD-like |Predicted hydrolases Cof |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1zbqa1 : (LEU124) (ALA193) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Peroxisomal multifunctional enzyme type 2 |Human (Homo sapiens) [TaxId: 9606]
d4iiub_ : (SER100) (LEU185) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Escherichia coli [TaxId: 199310]
d1qgda2 : (GLN118) (ASP183) [view usage] : c.36.1.10 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |TK-like PP module |Transketolase (TK), PP module |Escherichia coli [TaxId: 562]
d3uxya_ : (VAL104) (GLU176) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Rhodobacter sphaeroides [TaxId: 272943]
d4amua2 : (ASN168) (PHE218) [view usage] : c.78.1.0 |ATC-like |Aspartate/ornithine carbamoyltransferase |automated matches |automated matches |Mycoplasma penetrans [TaxId: 28227]
d3vzqa_ : (ASP125) (TYR185) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Cupriavidus necator [TaxId: 381666]
d3ai1a_ : (MET118) (LEU189) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Gluconobacter frateurii [TaxId: 38308]
d1ulsb_ : (LEU98) (PHE180) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |beta-keto acyl carrier protein reductase |Thermus thermophilus [TaxId: 274]
d4wsoa_ : (THR114) (THR162) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Burkholderia thailandensis [TaxId: 271848]
d2ztma_ : (HIS120) (TRP187) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Pseudomonas fragi [TaxId: 296]
d2icyb2 : (THR109) (ASN161) [view usage] : c.68.1.5 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |UDP-glucose pyrophosphorylase |UDP-glucose pyrophosphorylase 2 (UDPGP 2) |Thale cress (Arabidopsis thaliana) [TaxId: 3702]
d1zixa_ : (LEU153) (TRP196) [view usage] : c.69.1.9 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Dienelactone hydrolase |automated matches |Pseudomonas putida [TaxId: 303]
d3zv6a_ : (LEU127) (GLY185) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Comamonas testosteroni [TaxId: 285]
d3otxb_ : (VAL155) (LEU196) [view usage] : c.72.1.0 |Ribokinase-like |Ribokinase-like |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
d3zv3b_ : (LEU127) (GLY186) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Pandoraea pnomenusa [TaxId: 93220]
d2bufc_ : (SER4) (GLY68) [view usage] : c.73.1.2 |Carbamate kinase-like |Carbamate kinase-like |N-acetyl-l-glutamate kinase |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d2i6ba_ : (LEU152) (ASN196) [view usage] : c.72.1.1 |Ribokinase-like |Ribokinase-like |Ribokinase-like |Adenosine kinase |Human (Homo sapiens) [TaxId: 9606]
d3pzta_ : (ASP77) (TRP130) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d4jnya2 : (ASN488) (THR545) [view usage] : c.1.23.2 |TIM beta/alpha-barrel |FAD-linked oxidoreductase |Proline dehydrohenase domain of bifunctional PutA protein |Proline dehydrohenase domain of bifunctional PutA protein |Escherichia coli K-12 [TaxId: 83333]
d1powa3 : (VAL424) (ASN474) [view usage] : c.36.1.9 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Pyruvate oxidase and decarboxylase PP module |Pyruvate oxidase |Lactobacillus plantarum [TaxId: 1590]
d1hdca_ : (THR113) (MET184) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |3-alpha,20-beta-hydroxysteroid dehydrogenase |Streptomyces hydrogenans [TaxId: 1905]
d4iiua_ : (SER100) (LEU185) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Escherichia coli [TaxId: 199310]
d1h16a_ : (SER647) (VAL709) [view usage] : c.7.1.1 |PFL-like glycyl radical enzymes |PFL-like glycyl radical enzymes |PFL-like |Pyruvate formate-lyase, PFL |Escherichia coli [TaxId: 562]
d1bzya_ : (HIS38) (SER103) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Hypoxanthine-guanine PRTase (HGPRTase) |Human (Homo sapiens) [TaxId: 9606]
d1sb9a_ : (ASP110) (ASN195) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |UDP-N-acetylglucosamine 4-epimerase WbpP |Pseudomonas aeruginosa [TaxId: 287]
d2rbeb_ : (LEU155) (LEU217) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |11-beta-hydroxysteroid dehydrogenase 1 |Human (Homo sapiens) [TaxId: 9606]
d2vi0a_ : (ARG52) (LEU107) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Clostridium thermocellum [TaxId: 1515]
d1d2na_ : (SER585) (SER655) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein |Chinese hamster (Cricetulus griseus) [TaxId: 10029]
d6gpba_ : (MET441) (THR483) [view usage] : c.87.1.4 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |Oligosaccharide phosphorylase |Glycogen phosphorylase |Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
d3un1c_ : (THR92) (VAL178) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]
d1wmda2 : (THR139) (ALA184) [view usage] : c.41.1.1 |Subtilisin-like |Subtilisin-like |Subtilases |Alkaline serine protease kp-43, N-terminal domain |Bacillus sp. KSM-KP43 [TaxId: 109322]
d1ooea_ : (VAL105) (VAL176) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Dihydropteridin reductase (pteridine reductase) |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1zyna2 : (GLN106) (ASP155) [view usage] : c.47.1.2 |Thioredoxin fold |Thioredoxin-like |PDI-like |Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain |Salmonella typhimurium [TaxId: 90371]
d3izba_ : (GLY105) (LEU146) [view usage] : i.1.1.3 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Small subunit |Eukaryotic, cytoplasmic (40S subunit) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1hdra_ : (PHE100) (VAL182) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Dihydropteridin reductase (pteridine reductase) |Human (Homo sapiens) [TaxId: 9606]
d1l8qa2 : (THR163) (SER213) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Chromosomal replication initiation factor DnaA |Aquifex aeolicus [TaxId: 63363]
d1hyua4 : (ALA105) (ASP155) [view usage] : c.47.1.2 |Thioredoxin fold |Thioredoxin-like |PDI-like |Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain |Salmonella typhimurium [TaxId: 90371]
d1vp4b_ : (SER194) (PHE246) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Putative aminotransferase TM1131 |Thermotoga maritima [TaxId: 2336]
d4qeda_ : (THR102) (ILE185) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Staphylococcus epidermidis [TaxId: 1282]
d1n0ha3 : (ILE533) (ASN576) [view usage] : c.36.1.9 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |Pyruvate oxidase and decarboxylase PP module |Acetohydroxyacid synthase catalytic subunit |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d3v8bd_ : (LYS103) (ALA189) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
d1a19a_ : (ASN33) (SER89) [view usage] : c.9.1.1 |Barstar-like |Barstar-related |Barstar-related |Barstar (barnase inhibitor) |Bacillus amyloliquefaciens [TaxId: 1390]
d4jxda_ : (GLY70) (GLU113) [view usage] : c.44.2.0 |Phosphotyrosine protein phosphatases I-like |PTS system IIB component-like |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d2qi9f_ : (LEU71) (ALA109) [view usage] : c.92.2.2 |Chelatase-like |"Helical backbone" metal receptor |TroA-like |Vitamin B12 binding protein BtuF |Escherichia coli [TaxId: 562]
d1dhra_ : (TRP104) (VAL179) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Dihydropteridin reductase (pteridine reductase) |Norway rat (Rattus norvegicus) [TaxId: 10116]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, c.2, i.1, c.68, c.108, c.26, c.92, c.66, c.72, c.37, c.36, c.7, c.47, c.104, c.87, c.78, c.73, c.41,
c.61, c.9, c.44