Tableau information
Concept source: d1s72i_ amino acid (a.a.) range (THR75)(GLU140)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEHHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR75) (ALA83) H1
(ALA98) (VAL102) E2
(VAL102) (LYS112) H3
(ASP120) (GLY136) H4
(GLY136) (GLU140) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 96.1° E2
H3 149.5° -81.9° H3
H4 -75.7° -166.4° 110.7° H4
E5 61.4° -34.8° -111.6° -135.8°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2zjpf1 : (TYR76) (GLY140) [view usage] : a.4.7.1 |DNA/RNA-binding 3-helical bundle |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Deinococcus radiodurans [TaxId: 1299]
d2e34a1 : (PRO72) (VAL139) [view usage] : a.4.7.1 |DNA/RNA-binding 3-helical bundle |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Thermus thermophilus [TaxId: 274]
d1s72i_ : (THR75) (GLU140) [view usage] : a.4.7.1 |DNA/RNA-binding 3-helical bundle |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Haloarcula marismortui [TaxId: 2238]
d1vjra_ : (HIS0) (ASN45) [view usage] : c.108.1.14 |HAD-like |HAD-like |NagD-like |Hypothetical protein TM1742 |Thermotoga maritima [TaxId: 2336]
d2ixma1 : (VAL132) (GLY205) [view usage] : a.268.1.1 |PTPA-like |PTPA-like |PTPA-like |Serine/threonine-protein phosphatase 2A regulatory subunit B', PTPA |Human (Homo sapiens) [TaxId: 9606]
d2jg6a_ : (TRP117) (LEU176) [view usage] : a.96.1.0 |DNA-glycosylase |DNA-glycosylase |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1y39a1 : (PRO9) (GLU75) [view usage] : a.4.7.1 |DNA/RNA-binding 3-helical bundle |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Bacillus stearothermophilus [TaxId: 1422]
d1ufma_ : (ARG302) (GLU362) [view usage] : a.4.5.47 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |PCI domain (PINT motif) |COP9 signalosome complex subunit 4, GSN4 |Mouse (Mus musculus) [TaxId: 10090]
d4aiab_ : (TRP117) (LEU176) [view usage] : a.96.1.0 |DNA-glycosylase |DNA-glycosylase |automated matches |automated matches |Staphylococcus aureus [TaxId: 1280]
d1t2ka_ : (ILE8) (GLU94) [view usage] : a.4.5.23 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |Interferon regulatory factor |Interferon regulatory factor 3, IRF-3 |Human (Homo sapiens) [TaxId: 9606]
d3vodb_ : (THR39) (PRO88) [view usage] : a.4.5.28 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |MarR-like transcriptional regulators |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1ruob1 : (ASP138) (VAL205) [view usage] : a.4.5.4 |DNA/RNA-binding 3-helical bundle |"Winged helix" DNA-binding domain |CAP C-terminal domain-like |Catabolite gene activator protein (CAP), C-terminal domain |Escherichia coli [TaxId: 562]
d1iica2 : (CYS378) (ASP417) [view usage] : d.108.1.2 |Acyl-CoA N-acyltransferases (Nat) |Acyl-CoA N-acyltransferases (Nat) |N-myristoyl transferase, NMT |N-myristoyl transferase, NMT |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d1y39b1 : (PRO209) (GLU275) [view usage] : a.4.7.1 |DNA/RNA-binding 3-helical bundle |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Bacillus stearothermophilus [TaxId: 1422]
d4ai5b_ : (TRP117) (LEU176) [view usage] : a.96.1.0 |DNA-glycosylase |DNA-glycosylase |automated matches |automated matches |Staphylococcus aureus [TaxId: 282459]
d4gnib2 : (ASP341) (ALA376) [view usage] : c.55.1.0 |Ribonuclease H-like motif |Actin-like ATPase domain |automated matches |automated matches |Chaetomium thermophilum [TaxId: 759272]
d1hc8a_ : (PRO9) (GLU75) [view usage] : a.4.7.1 |DNA/RNA-binding 3-helical bundle |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Ribosomal protein L11, C-terminal domain |Bacillus stearothermophilus [TaxId: 1422]
d4ai4a_ : (TRP117) (LEU176) [view usage] : a.96.1.0 |DNA-glycosylase |DNA-glycosylase |automated matches |automated matches |Staphylococcus aureus [TaxId: 282459]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.108, c.55, a.96, d.108, a.4, a.268