Tableau information
Concept source: d3eooj_ amino acid (a.a.) range (ALA96)(ALA182)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA96) (GLY110) H1
(GLY112) (GLU117) E2
(ALA136) (ARG150) H3
(VAL156) (ASP162) E4
(ASP170) (ALA182) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 152.6° E2
H3 -43.9° 161.8° H3
E4 128.7° -24.1° 164.9° E4
H5 -72.2° 134.9° -28.7° 156.7°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±8.8° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d2pz0b_ : (ILE200) (LYS250) [view usage] : c.1.18.0 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |automated matches |automated matches |Thermoanaerobacter tengcongensis [TaxId: 273068]
d4ooza_ : (ASN297) (LYS364) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Cryptopygus antarcticus [TaxId: 187623]
d1kbla1 : (ASP804) (LEU871) [view usage] : c.1.12.2 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Pyruvate phosphate dikinase, C-terminal domain |Pyruvate phosphate dikinase, C-terminal domain |Clostridium symbiosum [TaxId: 1512]
d1wa3a_ : (MET3) (LEU55) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Thermotoga maritima [TaxId: 2336]
d2a5yc1 : (THR227) (ALA280) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |CED-4, NB-ARC domain |Nematode (Caenorhabditis elegans) [TaxId: 6239]
d1af7a2 : (GLU99) (GLY166) [view usage] : c.66.1.8 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Chemotaxis receptor methyltransferase CheR, C-terminal domain |Chemotaxis receptor methyltransferase CheR, C-terminal domain |Salmonella typhimurium [TaxId: 90371]
d2vgba3 : (ASP450) (CYS509) [view usage] : c.49.1.1 |Pyruvate kinase C-terminal domain-like |PK C-terminal domain-like |Pyruvate kinase, C-terminal domain |Pyruvate kinase, C-terminal domain |Human (Homo sapiens) [TaxId: 9606]
d3v1zb_ : (LYS187) (GLN253) [view usage] : c.52.1.7 |Restriction endonuclease-like |Restriction endonuclease-like |Cfr10I/Bse634I |Restriction endonuclease Bse634I |Bacillus stearothermophilus [TaxId: 1422]
d4hnoa_ : (LYS80) (VAL167) [view usage] : c.1.15.0 |TIM beta/alpha-barrel |Xylose isomerase-like |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
d1vr6a_ : (VAL255) (LEU333) [view usage] : c.1.10.4 |TIM beta/alpha-barrel |Aldolase |Class I DAHP synthetase |automated matches |Thermotoga maritima [TaxId: 2336]
d2is8a_ : (HIS23) (LEU88) [view usage] : c.57.1.0 |Molybdenum cofactor biosynthesis proteins |Molybdenum cofactor biosynthesis proteins |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d1tr9a_ : (SER222) (LEU286) [view usage] : c.1.8.7 |TIM beta/alpha-barrel |(Trans)glycosidases |NagZ-like |Beta-hexosaminidase NagZ |Vibrio cholerae [TaxId: 666]
d3ojca1 : (GLN59) (GLY117) [view usage] : c.78.2.0 |ATC-like |Aspartate/glutamate racemase |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d4m1ra_ : (LYS143) (LYS212) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Soil metagenome [TaxId: 410658]
d3vdua_ : (ILE122) (ARG193) [view usage] : e.49.1.1 |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Recombination protein RecR |Thermoanaerobacter tengcongensis [TaxId: 273068]
d1v8ea1 : (THR175) (LEU222) [view usage] : c.1.18.3 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |Glycerophosphoryl diester phosphodiesterase |Putative glycerophosphodiester phosphodiesterase TTHB141 |Thermus thermophilus [TaxId: 274]
d1qhoa4 : (ASN203) (ASN275) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
d2oxna_ : (SER222) (LEU286) [view usage] : c.1.8.7 |TIM beta/alpha-barrel |(Trans)glycosidases |NagZ-like |Beta-hexosaminidase NagZ |Vibrio cholerae [TaxId: 666]
d3iacc_ : (ILE328) (GLN401) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Salmonella typhimurium [TaxId: 90371]
d1eixc_ : (ALA173) (ARG243) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) |Escherichia coli [TaxId: 562]
d2gdva2 : (SER167) (VAL247) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Sucrose phosphorylase |Bifidobacterium adolescentis [TaxId: 1680]
d4oozb_ : (ASN297) (GLN361) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Cryptopygus antarcticus [TaxId: 187623]
d1vlwc_ : (MET1) (LEU55) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |KDPG aldolase |Thermotoga maritima [TaxId: 2336]
d3os4a2 : (ASP271) (PHE329) [view usage] : c.1.17.0 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d1kd0a1 : (LYS252) (LYS323) [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |beta-Methylaspartase |Clostridium tetanomorphum [TaxId: 1553]
d1y8ba_ : (ILE361) (LEU435) [view usage] : c.1.13.1 |TIM beta/alpha-barrel |Malate synthase G |Malate synthase G |Malate synthase G |Escherichia coli [TaxId: 562]
d1dbtb_ : (ALA166) (GLU235) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) |Bacillus subtilis [TaxId: 1423]
d1blle1 : (ALA91) (LEU159) [view usage] : c.50.1.1 |Macro domain-like |Macro domain-like |Leucine aminopeptidase (Aminopeptidase A), N-terminal domain |Leucine aminopeptidase (Aminopeptidase A), N-terminal domain |Cow (Bos taurus) [TaxId: 9913]
d3iaca_ : (ILE328) (GLY403) [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Salmonella typhimurium [TaxId: 90371]
d4gvfa_ : (PRO228) (LEU292) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Salmonella enterica [TaxId: 99287]
d1y65a_ : (SER222) (ASN285) [view usage] : c.1.8.7 |TIM beta/alpha-barrel |(Trans)glycosidases |NagZ-like |Beta-hexosaminidase NagZ |Vibrio cholerae [TaxId: 666]
d2zvib2 : (GLY129) (GLN206) [view usage] : c.1.14.0 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1dqwa_ : (ASN99) (LYS173) [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2m8ca_ : (ILE34) (ILE84) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Escherichia coli [TaxId: 536056]
d2acva_ : (MET3) (ALA64) [view usage] : c.87.1.10 |UDP-Glycosyltransferase/glycogen phosphorylase |UDP-Glycosyltransferase/glycogen phosphorylase |UDPGT-like |Triterpene UDP-glucosyl transferase UGT71G1 |Medicago truncatula [TaxId: 3880]
d2cbfa_ : (SER132) (GLY200) [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Cobalt precorrin-4 methyltransferase CbiF |Bacillus megaterium [TaxId: 1404]
d2bb0a2 : (SER123) (SER204) [view usage] : c.1.9.17 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Imidazolonepropionase-like |Imidazolonepropionase |Bacillus subtilis [TaxId: 1423]
d1cbfa_ : (SER132) (GLY200) [view usage] : c.90.1.1 |Tetrapyrrole methylase |Tetrapyrrole methylase |Tetrapyrrole methylase |Cobalt precorrin-4 methyltransferase CbiF |Bacillus megaterium [TaxId: 1404]
d1vlwb_ : (HIS-2) (LEU55) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |KDPG aldolase |Thermotoga maritima [TaxId: 2336]
d1na6b2 : (SER304) (GLY365) [view usage] : c.52.1.22 |Restriction endonuclease-like |Restriction endonuclease-like |Type II restriction endonuclease catalytic domain |Restriction endonuclease EcoRII, C-terminal domain |Escherichia coli [TaxId: 562]
d1mv8a2 : (PHE70) (CYS141) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |GDP-mannose 6-dehydrogenase |Pseudomonas aeruginosa [TaxId: 287]
d9rubb1 : (LYS174) (GLY252) [view usage] : c.1.14.1 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |RuBisCo, large subunit, C-terminal domain |Ribulose 1,5-bisphosphate carboxylase-oxygenase |Rhodospirillum rubrum [TaxId: 1085]
d1vbga1 : (ASP809) (VAL876) [view usage] : c.1.12.2 |TIM beta/alpha-barrel |Phosphoenolpyruvate/pyruvate domain |Pyruvate phosphate dikinase, C-terminal domain |Pyruvate phosphate dikinase, C-terminal domain |Maize (Zea mays) [TaxId: 4577]
d2fava_ : (LEU109) (LEU173) [view usage] : c.50.1.2 |Macro domain-like |Macro domain-like |Macro domain |automated matches |SARS coronavirus [TaxId: 227859]
d2zvia2 : (GLY129) (ALA194) [view usage] : c.1.14.0 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d1gyta1 : (GLU86) (HIS176) [view usage] : c.50.1.1 |Macro domain-like |Macro domain-like |Leucine aminopeptidase (Aminopeptidase A), N-terminal domain |Leucine aminopeptidase (Aminopeptidase A), N-terminal domain |Escherichia coli, PepA [TaxId: 562]
d1ntha_ : (VAL139) (SER215) [view usage] : c.1.25.1 |TIM beta/alpha-barrel |Monomethylamine methyltransferase MtmB |Monomethylamine methyltransferase MtmB |Monomethylamine methyltransferase MtmB |Methanosarcina barkeri [TaxId: 2208]
d2vdca2 : (GLU978) (ARG1060) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Alpha subunit of glutamate synthase, central and FMN domains |Azospirillum brasilense [TaxId: 192]
d1wm1a_ : (HIS54) (HIS126) [view usage] : c.69.1.7 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Proline iminopeptidase-like |Proline aminopeptidase |Serratia marcescens [TaxId: 615]
d1j5sa_ : (ILE320) (MET377) [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uronate isomerase TM0064 |Thermotoga maritima [TaxId: 2336]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.69, c.94, c.2, c.90, c.66, c.37, c.87, c.57, c.78, c.50, c.52, c.49, e.49