Tableau information
Concept source: d1swva_ amino acid (a.a.) range (THR129)(GLY198)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(THR129) (GLY144) H1
(ASP148) (PRO153) E2
(PRO163) (GLY174) H3
(HIS180) (ASP186) E4
(THR187) (GLY198) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 156.4° E2
H3 -53.0° 149.8° H3
E4 94.8° -63.6° 134.6° E4
H5 -99.0° 102.0° -59.2° -165.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1wnba_ : (ALA188) (THR236) [view usage] : c.82.1.1 |ALDH-like |ALDH-like |ALDH-like |Putative betaine aldehyde dehydrogenase YdcW |Escherichia coli [TaxId: 562]
d1wpqa1 : (ASN60) (LYS106) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ixdb_ : (THR49) (ILE129) [view usage] : c.134.1.0 |LmbE-like |LmbE-like |automated matches |automated matches |Bacillus cereus [TaxId: 1396]
d1ftra2 : (VAL231) (PHE296) [view usage] : d.58.33.1 |Ferredoxin-like |Formylmethanofuran:tetrahydromethanopterin formyltransferase |Formylmethanofuran:tetrahydromethanopterin formyltransferase |Formylmethanofuran:tetrahydromethanopterin formyltransferase |Methanopyrus kandleri [TaxId: 2320]
d1o5za1 : (MET372) (GLY422) [view usage] : c.59.1.2 |MurD-like peptide ligases, peptide-binding domain |MurD-like peptide ligases, peptide-binding domain |Folylpolyglutamate synthetase, C-terminal domain |Folylpolyglutamate synthetase, C-terminal domain |Thermotoga maritima [TaxId: 2336]
d1jawa1 : (GLY94) (GLY151) [view usage] : c.55.2.1 |Ribonuclease H-like motif |Creatinase/prolidase N-terminal domain |Creatinase/prolidase N-terminal domain |Aminopeptidase P |Escherichia coli [TaxId: 562]
d1w36b2 : (LEU729) (SER809) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Exodeoxyribonuclease V beta chain (RecB), N-terminal domain |Escherichia coli [TaxId: 562]
d4l4zb_ : (CYS71) (LEU135) [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d1ryaa_ : (ARG40) (GLN81) [view usage] : d.113.1.5 |Nudix |Nudix |GDP-mannose mannosyl hydrolase NudD |GDP-mannose mannosyl hydrolase NudD |Escherichia coli [TaxId: 562]
d3nzeb_ : (THR60) (LEU127) [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Arthrobacter aurescens [TaxId: 290340]
d1uirb_ : (GLY111) (TYR173) [view usage] : c.66.1.17 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Spermidine synthase |Spermidine synthase |Thermus thermophilus [TaxId: 274]
d1wywa_ : (LEU181) (GLY244) [view usage] : c.18.1.2 |Uracil-DNA glycosylase-like |Uracil-DNA glycosylase-like |Mug-like |G/T mismatch-specific thymine DNA glycosylase |Human (Homo sapiens) [TaxId: 9606]
d1e0jb_ : (THR293) (ARG359) [view usage] : c.37.1.11 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |RecA protein-like (ATPase-domain) |Gene 4 protein (g4p, DNA primase), helicase domain |Bacteriophage T7 [TaxId: 10760]
d4l4za_ : (CYS71) (LEU135) [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Escherichia coli [TaxId: 83333]
d2j01f1 : (PRO102) (ALA166) [view usage] : c.22.1.1 |Ribosomal protein L4 |Ribosomal protein L4 |Ribosomal protein L4 |Ribosomal protein L4 |Thermus thermophilus [TaxId: 274]
d3r77b_ : (SER101) (ASP167) [view usage] : c.33.1.3 |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |Isochorismatase-like hydrolases |Phenazine biosynthesis protein PhzD |Pseudomonas fluorescens [TaxId: 294]
d1x0xa1 : (ASN60) (LEU105) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2i8ta_ : (ARG40) (GLN81) [view usage] : d.113.1.5 |Nudix |Nudix |GDP-mannose mannosyl hydrolase NudD |automated matches |Escherichia coli [TaxId: 562]
d1m5sa2 : (ILE232) (PHE297) [view usage] : d.58.33.1 |Ferredoxin-like |Formylmethanofuran:tetrahydromethanopterin formyltransferase |Formylmethanofuran:tetrahydromethanopterin formyltransferase |Formylmethanofuran:tetrahydromethanopterin formyltransferase |Methanosarcina barkeri [TaxId: 2208]
d4oqpa_ : (ASP60) (MET127) [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d2i8tb_ : (ARG40) (GLN81) [view usage] : d.113.1.5 |Nudix |Nudix |GDP-mannose mannosyl hydrolase NudD |automated matches |Escherichia coli [TaxId: 562]
d2a1tr1 : (CYS60) (LEU119) [view usage] : c.26.2.3 |Adenine nucleotide alpha hydrolase-like |Adenine nucleotide alpha hydrolases-like |ETFP subunits |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2fdcb1 : (GLN17) (PHE80) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Nucleotide excision repair enzyme UvrB |Bacillus caldotenax [TaxId: 1395]
d1m35a1 : (GLY94) (GLY151) [view usage] : c.55.2.1 |Ribonuclease H-like motif |Creatinase/prolidase N-terminal domain |Creatinase/prolidase N-terminal domain |Aminopeptidase P |Escherichia coli [TaxId: 562]
d4v19f_ : (MET167) (LEU237) [view usage] : i.1.1.2 |Ribosome and ribosomal fragments |Ribosome and ribosomal fragments |Large subunit |Eukaryotic, mitochondrial (54S or 39S subunit) |Pig (Sus scrofa) [TaxId: 9823]
d2gnpa1 : (PHE57) (LEU127) [view usage] : c.124.1.8 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |SorC sugar-binding domain-like |Transcriptional regulator SP0247 |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2ixda_ : (THR49) (ILE129) [view usage] : c.134.1.0 |LmbE-like |LmbE-like |automated matches |automated matches |Bacillus cereus [TaxId: 1396]
d2pkpa_ : (MET38) (GLY99) [view usage] : c.8.2.0 |The "swivelling" beta/beta/alpha domain |LeuD/IlvD-like |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 243232]
d2hs3a3 : (PHE213) (ILE278) [view usage] : d.139.1.1 |PurM C-terminal domain-like |PurM C-terminal domain-like |PurM C-terminal domain-like |Phosphoribosylformylglycinamidine synthase II, domains 2 and 4 |Thermotoga maritima [TaxId: 2336]
d3qbob_ : (SER43) (ALA110) [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Yersinia pestis [TaxId: 214092]
d1zvka_ : (GLU84) (THR137) [view usage] : c.41.1.2 |Subtilisin-like |Subtilisin-like |Serine-carboxyl proteinase, SCP |automated matches |Alicyclobacillus sendaiensis [TaxId: 192387]
d4oqqa_ : (ASP60) (MET127) [view usage] : c.124.1.0 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |automated matches |automated matches |Bacillus subtilis [TaxId: 224308]
d2hnkc_ : (SER94) (TYR160) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Leptospira interrogans [TaxId: 173]
d1w36c2 : (ASN354) (GLY427) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain |Escherichia coli [TaxId: 562]
d3voma_ : (GLN51) (ASN119) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
d4fcca1 : (GLY110) (ASN188) [view usage] : c.58.1.0 |Aminoacid dehydrogenase-like, N-terminal domain |Aminoacid dehydrogenase-like, N-terminal domain |automated matches |automated matches |Escherichia coli [TaxId: 83334]
d4pv4a1 : (GLY92) (GLY149) [view usage] : c.55.2.0 |Ribonuclease H-like motif |Creatinase/prolidase N-terminal domain |automated matches |automated matches |Yersinia pestis [TaxId: 632]
d4omaa_ : (PRO64) (LEU120) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |automated matches |Citrobacter freundii [TaxId: 546]
d1e0da2 : (GLY373) (GLY437) [view usage] : c.59.1.1 |MurD-like peptide ligases, peptide-binding domain |MurD-like peptide ligases, peptide-binding domain |MurCDEF C-terminal domain |UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD |Escherichia coli [TaxId: 562]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.67, c.2, d.58, i.1, c.108, c.82, c.26, c.66, c.124, c.37, c.18, c.55, c.8, c.41, c.33, c.59, d.139, c.58, d.113, c.134,
c.22