Tableau information
Concept source: d3lbfa_ amino acid (a.a.) range (PRO61)(ASP121)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO61) (GLU72) H1
(ARG78) (GLY83) E2
(GLY87) (VAL97) H3
(GLN98) (GLU104) E4
(ILE106) (ASP121) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 150.3° E2
H3 -37.3° 170.5° H3
E4 127.3° -24.3° 164.5° E4
H5 -76.5° 133.2° -39.8° 154.6°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.4° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1mwoa2 : (SER182) (SER238) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial alpha-amylase |Pyrococcus woesei [TaxId: 2262]
d3tuid1 : (SER142) (ARG206) [view usage] : c.37.1.12 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |ABC transporter ATPase domain-like |automated matches |Escherichia coli K-12 [TaxId: 83333]
d3fe2a_ : (TRP125) (ALA187) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vlwa_ : (LYS145) (CYS203) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |KDPG aldolase |Thermotoga maritima [TaxId: 2336]
d3nfua2 : (THR180) (ILE248) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Chromohalobacter salexigens [TaxId: 290398]
d1euqa2 : (PHE10) (GLY89) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Glutaminyl-tRNA synthetase (GlnRS) |Escherichia coli [TaxId: 562]
d1gq6b_ : (MET93) (LYS171) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Proclavaminate amidino hydrolase |Streptomyces clavuligerus [TaxId: 1901]
d2e6cc_ : (THR73) (ARG142) [view usage] : c.106.1.0 |SurE-like |SurE-like |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d3hlta_ : (PHE184) (ASN237) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1w0mf_ : (PRO157) (LEU218) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Thermoproteus tenax [TaxId: 2271]
d1cgta4 : (ALA205) (ASN274) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
d2x42a1 : (ARG192) (GLY256) [view usage] : c.1.8.7 |TIM beta/alpha-barrel |(Trans)glycosidases |NagZ-like |Beta-glucosidase |Thermotoga neapolitana [TaxId: 309803]
d3niqa_ : (LEU98) (GLY176) [view usage] : c.42.1.0 |Arginase/deacetylase |Arginase/deacetylase |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d3ieia_ : (PRO64) (CYS136) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3uwpa_ : (SER140) (GLY210) [view usage] : c.66.1.31 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Catalytic, N-terminal domain of histone methyltransferase Dot1l |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4myna_ : (THR85) (GLU164) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |automated matches |Trypanosoma cruzi [TaxId: 469008]
d1yfja1 : (LEU15) (VAL65) [view usage] : c.66.1.28 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |N6 adenine-specific DNA methylase, DAM |DNA methylase T4DAM |Bacteriophage T4 [TaxId: 10665]
d1w0mg_ : (PRO157) (LEU218) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Thermoproteus tenax [TaxId: 2271]
d4cgta4 : (ALA205) (ASN274) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
d1a9nc_ : (GLY82) (PRO140) [view usage] : c.10.2.4 |Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) |L domain-like |U2A'-like |Splicesomal U2A' protein |Human (Homo sapiens) [TaxId: 9606]
d3mznb2 : (THR180) (ILE248) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Chromohalobacter salexigens [TaxId: 290398]
d3rana_ : (ASP77) (VAL137) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Ran |Dog (Canis familiaris) [TaxId: 9615]
d3no3a_ : (HIS205) (GLN258) [view usage] : c.1.18.0 |TIM beta/alpha-barrel |PLC-like phosphodiesterases |automated matches |automated matches |Parabacteroides distasonis [TaxId: 435591]
d1sqfa2 : (ASP232) (GLY294) [view usage] : c.66.1.38 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |NOL1/NOP2/sun |Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain |Escherichia coli [TaxId: 562]
d1qrta2 : (ASN9) (GLY89) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Glutaminyl-tRNA synthetase (GlnRS) |Escherichia coli [TaxId: 562]
d2ceva_ : (VAL82) (GLY148) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Bacillus caldovelox [TaxId: 33931]
d2x40a1 : (ARG192) (GLY256) [view usage] : c.1.8.7 |TIM beta/alpha-barrel |(Trans)glycosidases |NagZ-like |automated matches |Thermotoga neapolitana [TaxId: 309803]
d1o9ga_ : (PRO32) (ALA98) [view usage] : c.66.1.29 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |rRNA methyltransferase AviRa |rRNA methyltransferase AviRa |Streptomyces viridochromogenes [TaxId: 1938]
d1h4pa_ : (GLU116) (ALA217) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Exo-beta-(1,3)-glucanase |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
d2hk9b2 : (ASP106) (PHE166) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Shikimate 5-dehydrogenase AroE |Aquifex aeolicus [TaxId: 63363]
d3mzna2 : (THR180) (ILE248) [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Chromohalobacter salexigens [TaxId: 290398]
d1suia1 : (SER64) (LEU119) [view usage] : c.66.1.1 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |COMT-like |Caffeoyl-CoA O-methyltransferase |Alfalfa (Medicago sativa) [TaxId: 3879]
d3os4a2 : (THR143) (THR210) [view usage] : c.1.17.0 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
d2rd2a2 : (ASN9) (GLY89) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Glutaminyl-tRNA synthetase (GlnRS) |Escherichia coli K-12 [TaxId: 83333]
d1mu9b1 : (ILE185) (GLU246) [view usage] : d.136.1.3 |Phospholipase D/nuclease |Phospholipase D/nuclease |Tyrosyl-DNA phosphodiesterase TDP1 |Tyrosyl-DNA phosphodiesterase TDP1 |Human (Homo sapiens) [TaxId: 9606]
d3p71t_ : (ALA63) (PRO138) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1wa3d_ : (LYS145) (CYS203) [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Thermotoga maritima [TaxId: 2336]
d2hk7b2 : (ASP106) (ALA163) [view usage] : c.2.1.7 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Aminoacid dehydrogenase-like, C-terminal domain |Shikimate 5-dehydrogenase AroE |Aquifex aeolicus [TaxId: 63363]
d1rqda_ : (ILE259) (GLY328) [view usage] : c.31.1.1 |DHS-like NAD/FAD-binding domain |DHS-like NAD/FAD-binding domain |Deoxyhypusine synthase, DHS |Deoxyhypusine synthase, DHS |Human (Homo sapiens) [TaxId: 9606]
d2aaaa2 : (THR181) (VAL245) [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Fungal alpha-amylases |Aspergillus niger, acid amylase [TaxId: 5061]
d3vm7a1 : (ASP199) (TRP264) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Malbranchea cinnamomea [TaxId: 5041]
d3o6aa_ : (GLN78) (LYS174) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Yeast (Candida albicans) [TaxId: 5476]
d2fwrb2 : (ASP96) (GLY157) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |DNA repair protein RAD25 |Archaeoglobus fulgidus [TaxId: 2234]
d2v7ga_ : (ILE140) (ARG210) [view usage] : e.51.1.1 |Urocanase |Urocanase |Urocanase |automated matches |Pseudomonas putida [TaxId: 303]
d3rodd_ : (SER32) (ALA100) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d3i6ra_ : (LYS482) (GLY554) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |automated matches |Plasmodium falciparum [TaxId: 36329]
d1f07a_ : (ASP267) (PHE321) [view usage] : c.1.16.3 |TIM beta/alpha-barrel |Bacterial luciferase-like |F420 dependent oxidoreductases |Coenzyme F420 dependent tetrahydromethanopterin reductase |Methanobacterium thermoautotrophicum [TaxId: 145262]
d3nyda_ : (ALA221) (GLN302) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Thermoascus aurantiacus [TaxId: 5087]
d2c0ha1 : (SER294) (ARG357) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |endo-1,4-beta-mannosidase |Blue mussel (Mytilus edulis) [TaxId: 6550]
d3i68a_ : (LYS482) (GLY554) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |automated matches |Plasmodium falciparum [TaxId: 36329]
d1hg3a_ : (PRO160) (VAL222) [view usage] : c.1.1.1 |TIM beta/alpha-barrel |Triosephosphate isomerase (TIM) |Triosephosphate isomerase (TIM) |Triosephosphate isomerase |Pyrococcus woesei [TaxId: 2262]
d1o9ha_ : (PRO32) (SER101) [view usage] : c.66.1.29 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |rRNA methyltransferase AviRa |rRNA methyltransferase AviRa |Streptomyces viridochromogenes [TaxId: 1938]
d1hnnb_ : (VAL553) (GLU616) [view usage] : c.66.1.15 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Arylamine N-methyltransferase |Phenylethanolamine N-methyltransferase, PNMTase |Human (Homo sapiens) [TaxId: 9606]
d2fwra2 : (ASP96) (ARG152) [view usage] : c.37.1.19 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Tandem AAA-ATPase domain |DNA repair protein RAD25 |Archaeoglobus fulgidus [TaxId: 2234]
d1yf3a1 : (LEU15) (LEU62) [view usage] : c.66.1.28 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |N6 adenine-specific DNA methylase, DAM |DNA methylase T4DAM |Bacteriophage T4 [TaxId: 10665]
d3sbfa2 : (VAL141) (GLU223) [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |automated matches |Vibrionales bacterium [TaxId: 391574]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.10, c.2, c.108, c.26, c.66, c.42, c.37, c.31, e.51, d.136, c.106