Tableau information
Concept source: d2qu7a_ amino acid (a.a.) range (ASN162)(GLY243)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ASN162) (GLU175) H1
(LYS179) (LEU185) E2
(SER191) (ASP208) H3
(LEU215) (SER219) E4
(GLY224) (GLY243) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 145.9° E2
H3 -39.4° -174.6° H3
E4 138.9° -11.1° 171.7° E4
H5 -29.2° 162.7° -19.7° 164.4°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±12.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4h0cb_ : (ALA138) (LYS207) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Dyadobacter fermentans [TaxId: 471854]
d4japa1 : (ASP64) (PRO156) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d1jyla_ : (PRO37) (LEU93) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |CTP:phosphocholine cytidylytransferase LicC |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d3pnla_ : (PRO83) (ARG166) [view usage] : c.119.1.2 |DAK1/DegV-like |DAK1/DegV-like |DAK1 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1i1oa_ : (SER77) (ALA147) [view usage] : c.23.5.1 |Flavodoxin-like |Flavoproteins |Flavodoxin-related |Flavodoxin |Desulfovibrio vulgaris [TaxId: 881]
d1byka_ : (ASP158) (GLU223) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Trehalose repressor, C-terminal domain |Escherichia coli [TaxId: 562]
d1u0oc1 : (ASN633) (ALA698) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |von Willebrand factor A1 domain, vWA1 |Mouse (Mus musculus) [TaxId: 10090]
d3c3ea_ : (SER244) (GLU305) [view usage] : c.143.1.1 |CofD-like |CofD-like |CofD-like |LPPG:FO 2-phospho-L-lactate transferase CofD |Methanosarcina mazei [TaxId: 2209]
d4il8a3 : (TYR259) (GLU317) [view usage] : c.84.1.0 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
d1we3a2 : (VAL229) (VAL294) [view usage] : c.8.5.1 |The "swivelling" beta/beta/alpha domain |GroEL apical domain-like |GroEL-like chaperone, apical domain |GroEL, A domain |Thermus thermophilus [TaxId: 274]
d4h0ca_ : (ALA138) (LYS207) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Dyadobacter fermentans [TaxId: 471854]
d1j24a_ : (LEU64) (ARG136) [view usage] : c.52.1.20 |Restriction endonuclease-like |Restriction endonuclease-like |XPF/Rad1/Mus81 nuclease |Putative ATP-dependent RNA helicase Hef, nuclease domain |Pyrococcus furiosus [TaxId: 2261]
d1k35a3 : (TYR259) (THR318) [view usage] : c.84.1.1 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphomannomutase/phosphoglucomutase |Pseudomonas aeruginosa [TaxId: 287]
d1cvra2 : (VAL227) (GLU300) [view usage] : c.17.1.2 |Caspase-like |Caspase-like |Gingipain R (RgpB), N-terminal domain |Gingipain R (RgpB), N-terminal domain |Porphyromonas gingivalis [TaxId: 837]
d4i36a_ : (GLY138) (GLY212) [view usage] : c.89.1.1 |Phosphofructokinase |Phosphofructokinase |Phosphofructokinase |ATP-dependent phosphofructokinase |Bacillus stearothermophilus [TaxId: 1422]
d1m10a_ : (PRO627) (ALA698) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |von Willebrand factor A1 domain, vWA1 |Human (Homo sapiens) [TaxId: 9606]
d3kg2a1 : (LEU117) (LEU186) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Ionotropic glutamate receptor 2 (GluR2) amino-terminal domain (ATD) |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1e6la_ : (ASP64) (GLY128) [view usage] : c.23.1.1 |Flavodoxin-like |CheY-like |CheY-related |CheY protein |Escherichia coli [TaxId: 562]
d1pw5a_ : (PRO186) (GLU253) [view usage] : c.108.1.14 |HAD-like |HAD-like |NagD-like |Hypothetical protein TM1742 |Thermotoga maritima [TaxId: 2336]
d3vaxa_ : (GLY68) (LEU136) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Streptomyces lividans [TaxId: 1916]
d3n0xa_ : (ASN139) (LEU210) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodopseudomonas palustris [TaxId: 1076]
d2fpsb_ : (GLU113) (ARG165) [view usage] : c.108.1.19 |HAD-like |HAD-like |Histidinol phosphatase-like |Histidine biosynthesis bifunctional protein HisB, phosphatase domain |Escherichia coli [TaxId: 562]
d2ch1a1 : (HIS79) (LEU141) [view usage] : c.67.1.3 |PLP-dependent transferase-like |PLP-dependent transferases |Cystathionine synthase-like |3-hydroxykynurenine transaminase |African malaria mosquito (Anopheles gambiae) [TaxId: 7165]
d4fe3a_ : (ALA246) (THR296) [view usage] : c.108.1.21 |HAD-like |HAD-like |Pyrimidine 5'-nucleotidase (UMPH-1) |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d1lnza2 : (TYR255) (ASN330) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Obg GTP-binding protein middle domain |Bacillus subtilis [TaxId: 1423]
d2hj9a_ : (ASP179) (LYS254) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Quorum-sensing signal (autoinducer-2) binding protein LuxP |Vibrio harveyi [TaxId: 669]
d1ir6a_ : (VAL122) (LEU202) [view usage] : c.107.1.2 |DHH phosphoesterases |DHH phosphoesterases |Exonuclease RecJ |Exonuclease RecJ |Thermus thermophilus [TaxId: 274]
d3gbva_ : (SER174) (HIS255) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Bacteroides fragilis [TaxId: 272559]
d1i9ca_ : (LEU74) (ASN135) [view usage] : c.23.6.1 |Flavodoxin-like |Cobalamin (vitamin B12)-binding domain |Cobalamin (vitamin B12)-binding domain |Glutamate mutase, small subunit |Clostridium cochlearium [TaxId: 1494]
d1jv2b2 : (SER291) (LYS354) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |Integrin beta A domain |Human (Homo sapiens) [TaxId: 9606]
d4c2bc_ : (ASN1396) (ALA1461) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4f32a2 : (LYS294) (ARG367) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Burkholderia vietnamiensis [TaxId: 269482]
d3fysa_ : (ILE66) (GLY137) [view usage] : c.119.1.0 |DAK1/DegV-like |DAK1/DegV-like |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
d3c3da_ : (SER245) (HIS306) [view usage] : c.143.1.1 |CofD-like |CofD-like |CofD-like |LPPG:FO 2-phospho-L-lactate transferase CofD |Methanosarcina mazei [TaxId: 2209]
d2pjuc_ : (SER89) (GLY152) [view usage] : c.92.3.1 |Chelatase-like |PrpR receptor domain-like |PrpR receptor domain-like |Propionate catabolism operon regulatory protein PrpR |Escherichia coli [TaxId: 562]
d3rjya_ : (LYS254) (LEU341) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Fervidobacterium nodosum [TaxId: 381764]
d1xi9c_ : (VAL102) (LYS161) [view usage] : c.67.1.1 |PLP-dependent transferase-like |PLP-dependent transferases |AAT-like |Putative alanine aminotransferase |Pyrococcus furiosus [TaxId: 2261]
d3pdia_ : (SER38) (SER114) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Azotobacter vinelandii [TaxId: 322710]
d3pdia_ : (TYR234) (ASP292) [view usage] : c.92.2.0 |Chelatase-like |"Helical backbone" metal receptor |automated matches |automated matches |Azotobacter vinelandii [TaxId: 322710]
d4rhcc_ : (VAL85) (LYS144) [view usage] : c.23.13.0 |Flavodoxin-like |Type II 3-dehydroquinate dehydratase |automated matches |automated matches |Acinetobacter baumannii [TaxId: 400667]
d2jgaa_ : (ASP231) (ILE285) [view usage] : c.108.1.21 |HAD-like |HAD-like |Pyrimidine 5'-nucleotidase (UMPH-1) |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2wgda2 : (VAL285) (VAL350) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
d4i36b_ : (PHE139) (GLY212) [view usage] : c.89.1.1 |Phosphofructokinase |Phosphofructokinase |Phosphofructokinase |ATP-dependent phosphofructokinase |Bacillus stearothermophilus [TaxId: 1422]
d1cb7a_ : (LEU74) (ASN135) [view usage] : c.23.6.1 |Flavodoxin-like |Cobalamin (vitamin B12)-binding domain |Cobalamin (vitamin B12)-binding domain |Glutamate mutase, small subunit |Clostridium cochlearium [TaxId: 1494]
d1jyka_ : (ILE39) (LEU93) [view usage] : c.68.1.13 |Nucleotide-diphospho-sugar transferases |Nucleotide-diphospho-sugar transferases |Cytidylytransferase |CTP:phosphocholine cytidylytransferase LicC |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d2iksa_ : (ASP163) (LEU233) [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1k75a_ : (ALA146) (ALA194) [view usage] : c.82.1.2 |ALDH-like |ALDH-like |L-histidinol dehydrogenase HisD |L-histidinol dehydrogenase HisD |Escherichia coli [TaxId: 562]
d2bhnc2 : (ARG77) (SER147) [view usage] : c.52.1.20 |Restriction endonuclease-like |Restriction endonuclease-like |XPF/Rad1/Mus81 nuclease |XPF endonuclease |Aeropyrum pernix [TaxId: 56636]
d1kfia3 : (PRO325) (GLY385) [view usage] : c.84.1.1 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Exocytosis-sensitive phosphoprotein, pp63/parafusin |Ciliate (Paramecium tetraurelia) [TaxId: 5888]
d1k35a2 : (ILE155) (ASN234) [view usage] : c.84.1.1 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphomannomutase/phosphoglucomutase |Pseudomonas aeruginosa [TaxId: 287]
d3pnka_ : (PRO83) (LEU159) [view usage] : c.119.1.2 |DAK1/DegV-like |DAK1/DegV-like |DAK1 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1gkla_ : (SER986) (ALA1070) [view usage] : c.69.1.2 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carboxylesterase |Feruloyl esterase domain of the cellulosomal xylanase y |Clostridium thermocellum [TaxId: 1515]
d2o20f_ : (ASP163) (ALA230) [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Glucose-resistance amylase regulator CcpA, C-terminal domain |Lactococcus lactis [TaxId: 1358]
d1z0fa_ : (LEU102) (ILE172) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1ilvb_ : (THR70) (GLU149) [view usage] : c.106.1.1 |SurE-like |SurE-like |SurE-like |SurE homolog TM1662 |Thermotoga maritima [TaxId: 2336]
d2jpda_ : (ASP151) (TYR215) [view usage] : c.52.1.20 |Restriction endonuclease-like |Restriction endonuclease-like |XPF/Rad1/Mus81 nuclease |DNA excision repair protein ERCC-1 |Human (Homo sapiens) [TaxId: 9606]
d1z6zc_ : (PRO22) (ARG81) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Sepiapterin reductase |Human (Homo sapiens) [TaxId: 9606]
d3nyia_ : (SER66) (GLY142) [view usage] : c.119.1.0 |DAK1/DegV-like |DAK1/DegV-like |automated matches |automated matches |Eubacterium ventriosum [TaxId: 411463]
d2cyja1 : (PRO50) (LEU104) [view usage] : c.103.1.1 |MTH938-like |MTH938-like |MTH938-like |Hypothetical protein PH1505 |Pyrococcus horikoshii [TaxId: 53953]
d1fnsa_ : (ASN633) (ALA698) [view usage] : c.62.1.1 |vWA-like |vWA-like |Integrin A (or I) domain |von Willebrand factor A1 domain, vWA1 |Human (Homo sapiens) [TaxId: 9606]
d4ewpa2 : (GLY240) (GLU322) [view usage] : c.95.1.0 |Thiolase-like |Thiolase-like |automated matches |automated matches |Micrococcus luteus [TaxId: 465515]
d3vmfa1 : (GLY130) (LEU222) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Aeropyrum pernix [TaxId: 272557]
d1k2yx3 : (PRO260) (THR318) [view usage] : c.84.1.1 |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphoglucomutase, first 3 domains |Phosphomannomutase/phosphoglucomutase |Pseudomonas aeruginosa [TaxId: 287]
d2xt0a_ : (GLY222) (GLY296) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Plesiocystis pacifica [TaxId: 191768]
d1yzla1 : (LEU98) (LEU173) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |Rab9a |Mouse (Mus musculus) [TaxId: 10090]
d4lrya_ : (PRO83) (GLY167) [view usage] : c.119.1.2 |DAK1/DegV-like |DAK1/DegV-like |DAK1 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4ne7a_ : (GLU39) (ASP117) [view usage] : c.41.1.2 |Subtilisin-like |Subtilisin-like |Serine-carboxyl proteinase, SCP |automated matches |Alicyclobacillus sendaiensis [TaxId: 192387]
d1z6za1 : (PRO22) (GLU82) [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Sepiapterin reductase |Human (Homo sapiens) [TaxId: 9606]
d1sioa_ : (GLU39) (ASP117) [view usage] : c.41.1.2 |Subtilisin-like |Subtilisin-like |Serine-carboxyl proteinase, SCP |Serine-carboxyl proteinase, SCP |Alicyclobacillus sendaiensis, kumamolisin-as [TaxId: 192387]
d1j22a_ : (LEU64) (GLU135) [view usage] : c.52.1.20 |Restriction endonuclease-like |Restriction endonuclease-like |XPF/Rad1/Mus81 nuclease |Putative ATP-dependent RNA helicase Hef, nuclease domain |Pyrococcus furiosus [TaxId: 2261]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, c.2, c.68, c.108, c.82, c.92, c.93, c.23, c.37, c.89, c.95, c.107, c.62, c.8, c.41, c.52, c.119, c.17,
c.106, c.84, c.143, c.103