Tableau information
Concept source: d3vd5a3 amino acid (a.a.) range (GLU369)(ASP429)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEHEH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLU369) (ASN383) H1
(ASN385) (HIS391) E2
(LEU397) (GLY406) H3
(TYR408) (ALA413) E4
(ASN424) (ASP429) H5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 133.9° E2
H3 -33.3° -166.4° H3
E4 133.2° -7.2° -162.6° E4
H5 -110.7° 78.9° -101.0° 72.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3hn3b3 : (ASP362) (ASN419) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Glucuronidase, domain 3 |Human (Homo sapiens) [TaxId: 9606]
d4keaa_ : (VAL77) (THR133) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Bacillus sp. [TaxId: 129908]
d1qk3b_ : (SER131) (LYS227) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Hypoxanthine-guanine-xanthine PRTase |Toxoplasma gondii [TaxId: 5811]
d1wq4a_ : (SER169) (ASN262) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tyrosyl-tRNA synthetase (TyrRS) |Escherichia coli [TaxId: 316407]
d1h3ea1 : (SER169) (VAL257) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tyrosyl-tRNA synthetase (TyrRS) |Thermus thermophilus [TaxId: 274]
d1g8ka2 : (THR135) (GLY211) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Arsenite oxidase large subunit |Alcaligenes faecalis [TaxId: 511]
d2p65a_ : (TYR95) (GLN166) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |automated matches |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
d1mfza3 : (VAL301) (ARG360) [view usage] : c.26.3.1 |Adenine nucleotide alpha hydrolase-like |UDP-glucose/GDP-mannose dehydrogenase C-terminal domain |UDP-glucose/GDP-mannose dehydrogenase C-terminal domain |GDP-mannose 6-dehydrogenase, GDP-binding domain |Pseudomonas aeruginosa [TaxId: 287]
d3c3na_ : (PHE80) (PHE145) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |automated matches |Trypanosoma cruzi [TaxId: 5693]
d1g8ja2 : (THR135) (GLY211) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Arsenite oxidase large subunit |Alcaligenes faecalis [TaxId: 511]
d2qeej_ : (ASN197) (GLY273) [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
d1r27a2 : (SER161) (THR230) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Respiratory nitrate reductase 1 alpha chain |Escherichia coli [TaxId: 562]
d2gcaa2 : (THR119) (GLY175) [view usage] : c.72.2.2 |Ribokinase-like |MurD-like peptide ligases, catalytic domain |Folylpolyglutamate synthetase |Folylpolyglutamate synthetase |Lactobacillus casei [TaxId: 1582]
d1m33a_ : (SER60) (ASP135) [view usage] : c.69.1.26 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Biotin biosynthesis protein BioH |Biotin biosynthesis protein BioH |Escherichia coli [TaxId: 562]
d1qoqb_ : (ALA85) (ARG141) [view usage] : c.79.1.1 |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase beta subunit-like PLP-dependent enzymes |Tryptophan synthase, beta-subunit |Salmonella typhimurium [TaxId: 90371]
d1crla_ : (ASN176) (ALA266) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Type-B carboxylesterase/lipase |Fungus (Candida rugosa), formerly Cylindracea [TaxId: 5481]
d1jila_ : (SER164) (GLN259) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |Tyrosyl-tRNA synthetase (TyrRS) |Staphylococcus aureus [TaxId: 1280]
d1vbma_ : (SER169) (THR263) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |automated matches |Escherichia coli [TaxId: 562]
d1yq9b_ : (HIS54) (GLY127) [view usage] : e.19.1.1 |HydA/Nqo6-like |HydA/Nqo6-like |Nickel-iron hydrogenase, small subunit |automated matches |Desulfovibrio gigas [TaxId: 879]
d4ke9a_ : (VAL77) (THR133) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Bacillus sp. [TaxId: 129908]
d2c44a1 : (ILE110) (ASP160) [view usage] : c.67.1.2 |PLP-dependent transferase-like |PLP-dependent transferases |Beta-eliminating lyases |Tryptophan indol-lyase (tryptophanase) |Escherichia coli [TaxId: 562]
d1gz7a_ : (ASN176) (GLY267) [view usage] : c.69.1.17 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Fungal lipases |Type-B carboxylesterase/lipase |Candida rugosa, lipase 2 isoform [TaxId: 5481]
d1ex1a1 : (THR41) (ARG119) [view usage] : c.1.8.7 |TIM beta/alpha-barrel |(Trans)glycosidases |NagZ-like |Beta-D-glucan exohydrolase, N-terminal domain |Barley (Hordeum vulgare) [TaxId: 4513]
d2jioa2 : (SER80) (GLY153) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |automated matches |Desulfovibrio desulfuricans [TaxId: 876]
d2qjia_ : (GLU106) (ASP164) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Methanocaldococcus jannaschii [TaxId: 2190]
d1xtsa_ : (PRO71) (ARG127) [view usage] : c.37.1.0 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d4p08a1 : (ASP89) (GLY156) [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |automated matches |Rhodococcus sp. [TaxId: 104109]
d2g25a2 : (THR243) (ASP305) [view usage] : c.36.1.10 |Thiamin diphosphate-binding fold (THDP-binding) |Thiamin diphosphate-binding fold (THDP-binding) |TK-like PP module |Pyruvate dehydrogenase E1 component, PP module |Escherichia coli [TaxId: 562]
d1yq9a_ : (HIS54) (GLY127) [view usage] : e.19.1.1 |HydA/Nqo6-like |HydA/Nqo6-like |Nickel-iron hydrogenase, small subunit |automated matches |Desulfovibrio gigas [TaxId: 879]
d3s55d_ : (ILE124) (THR214) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium abscessus [TaxId: 561007]
d4etwa_ : (SER60) (ASP134) [view usage] : c.69.1.26 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Biotin biosynthesis protein BioH |automated matches |Shigella flexneri [TaxId: 623]
d3mmtb_ : (GLY119) (SER191) [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Bartonella henselae [TaxId: 38323]
d3f4nc_ : (THR54) (VAL113) [view usage] : c.1.24.1 |TIM beta/alpha-barrel |Pyridoxine 5'-phosphate synthase |Pyridoxine 5'-phosphate synthase |automated matches |Yersinia pestis [TaxId: 632]
d2c44c_ : (ILE110) (ASP160) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3dyma3 : (GLU369) (ASP429) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Escherichia coli K-12 [TaxId: 83333]
d2vx7a_ : (SER101) (ILE177) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId: 155077]
d2g6vb2 : (LEU281) (PRO337) [view usage] : c.71.1.0 |Dihydrofolate reductase-like |Dihydrofolate reductase-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d1l7ra2 : (HIS87) (GLY156) [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |Bacterial cocaine esterase N-terminal domain |Rhodococcus sp. mb1 [TaxId: 51612]
d1zgha2 : (VAL43) (ARG82) [view usage] : c.65.1.1 |Formyltransferase |Formyltransferase |Formyltransferase |Methionyl-tRNAfmet formyltransferase |Clostridium thermocellum [TaxId: 1515]
d2jima2 : (SER80) (GLY153) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Periplasmic nitrate reductase alpha chain |Desulfovibrio desulfuricans [TaxId: 876]
d1x8xa_ : (SER169) (THR263) [view usage] : c.26.1.1 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |Class I aminoacyl-tRNA synthetases (RS), catalytic domain |automated matches |Escherichia coli [TaxId: 562]
d3kkpa_ : (SER75) (ARG134) [view usage] : c.37.1.8 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |G proteins |automated matches |Mouse (Mus musculus) [TaxId: 10090]
d4iqfa1 : (GLU68) (GLY128) [view usage] : c.65.1.0 |Formyltransferase |Formyltransferase |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d2cmga_ : (GLN131) (HIS178) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Helicobacter pylori [TaxId: 85962]
d3i2ga1 : (HIS87) (GLY156) [view usage] : c.69.1.21 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |PepX catalytic domain-like |automated matches |Rhodococcus sp. [TaxId: 104109]
d2ocga_ : (ASP95) (ARG163) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2ocla_ : (ASP95) (ARG163) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1bgla5 : (GLU369) (ASP429) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Escherichia coli [TaxId: 562]
d1q16a2 : (SER161) (THR230) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Respiratory nitrate reductase 1 alpha chain |Escherichia coli [TaxId: 562]
d1g8jc2 : (TRP136) (GLY211) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Arsenite oxidase large subunit |Alcaligenes faecalis [TaxId: 511]
d1iunb_ : (SER77) (TYR145) [view usage] : c.69.1.10 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |Carbon-carbon bond hydrolase |Meta-cleavage product hydrolase CumD |Pseudomonas fluorescens [TaxId: 294]
d4iqfb1 : (GLU68) (GLY128) [view usage] : c.65.1.0 |Formyltransferase |Formyltransferase |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
d2v3va2 : (SER80) (GLY153) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |automated matches |Desulfovibrio desulfuricans [TaxId: 876]
d3hk5a_ : (ASN197) (GLY273) [view usage] : c.1.9.8 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |Uronate isomerase-like |Uncharacterized protein BH0493 |Bacillus halodurans [TaxId: 86665]
d3ir5a1 : (SER161) (THR230) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d1jyna5 : (GLU369) (ASP429) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Escherichia coli [TaxId: 562]
d3vd3a3 : (GLU369) (ASP429) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |beta-Galactosidase, domain 3 |Escherichia coli [TaxId: 562]
d3egwa1 : (SER161) (THR230) [view usage] : c.81.1.1 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |Formate dehydrogenase/DMSO reductase, domains 1-3 |automated matches |Escherichia coli K-12 [TaxId: 83333]
d4ke8a_ : (PHE70) (THR133) [view usage] : c.69.1.0 |alpha/beta-Hydrolases |alpha/beta-Hydrolases |automated matches |automated matches |Bacillus sp. [TaxId: 129908]
d3e8za_ : (VAL84) (GLY138) [view usage] : c.42.1.1 |Arginase/deacetylase |Arginase/deacetylase |Arginase-like amidino hydrolases |Arginase |Norway rat (Rattus norvegicus) [TaxId: 10116]
d1qk3a_ : (SER131) (LYS227) [view usage] : c.61.1.1 |PRTase-like |PRTase-like |Phosphoribosyltransferases (PRTases) |Hypoxanthine-guanine-xanthine PRTase |Toxoplasma gondii [TaxId: 5811]
d2fmta2 : (PRO70) (ARG118) [view usage] : c.65.1.1 |Formyltransferase |Formyltransferase |Formyltransferase |Methionyl-tRNAfmet formyltransferase |Escherichia coli [TaxId: 562]
d1xr4a1 : (SER141) (ALA212) [view usage] : c.124.1.2 |NagB/RpiA/CoA transferase-like |NagB/RpiA/CoA transferase-like |CoA transferase alpha subunit-like |Putative citrate lyase alpha chain, citF2 |Salmonella typhimurium [TaxId: 90371]
d3cf1a2 : (SER282) (ASP354) [view usage] : c.37.1.20 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Extended AAA-ATPase domain |Membrane fusion ATPase VCP/p97 |Mouse (Mus musculus) [TaxId: 10090]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.67, c.69, c.81, c.2, c.79, c.26, c.66, c.124, c.42, c.72, c.37, c.36, c.71, c.61, c.65, e.19