Protein Concepts Dictionary

Tableau information

Concept source:  d1ayla2  amino acid (a.a.) range (PRO9)(GLY60)

nSSEs in this Concept: 5

String of secondary struct.elems. (SSEs) defining this concept: HEHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (PRO9)   (GLY16) H1
	   (HIS21)   (ASN26) E2
	   (SER28)   (ASP38) H3
	   (GLU45)   (ASN51) E4
	   (VAL55)   (GLY60) E5

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                 
E2       99.3°   E2                          
H3      -65.8° -127.8°   H3                   
E4      123.0°   40.5° -104.3°   E4            
E5      -21.1° -120.0°   57.7°  141.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1aq2a2 :     (THR8)   (GLY60)   [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
 d1uwwa_ :   (LEU133)  (GLY179)   [view usage] : b.18.1.23 |Galactose-binding domain-like |Galactose-binding domain-like |Family 28 carbohydrate binding module, CBM28 |Endoglucanase (alkaline cellulase) |Bacillus sp. 1139 [TaxId: 1411]
 d2pxzx2 :     (PRO9)   (ILE61)   [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
 d2fafa1 :    (ALA43)   (THR98)   [view usage] : c.109.1.0 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |automated matches |automated matches |Chicken (Gallus gallus) [TaxId: 9031]
 d1e5oe_ :   (PRO269)  (SER325)   [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |Endothiapepsin |Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]
 d1ayla2 :     (PRO9)   (GLY60)   [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
 d1ytma1 :     (SER2)   (GLY55)   [view usage] : c.109.1.0 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |automated matches |automated matches |Anaerobiospirillum succiniciproducens [TaxId: 13335]
 d1k3ca2 :     (PRO9)   (ASP58)   [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
 d2py7x2 :     (THR8)   (GLY60)   [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Escherichia coli [TaxId: 562]
 d1ygga1 :     (LEU5)   (GLY60)   [view usage] : c.109.1.1 |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |PEP carboxykinase N-terminal domain |Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) |Actinobacillus succinogenes [TaxId: 67854]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.50,    b.18,   c.109