Tableau information
Concept source: d1x0pa1 amino acid (a.a.) range (PRO119)(GLU179)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO119) (GLY136) H1
(GLY136) (GLY144) E2
(GLY146) (GLY154) E3
(ASP155) (LEU167) H4
(SER174) (GLU179) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 158.5° E2
E3 -11.6° 166.2° E3
H4 157.9° -36.7° 157.0° H4
E5 -35.0° 128.6° -37.7° 165.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±13.0° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1wdka3 : (ARG443) (ASN493) [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Fatty oxidation complex alpha subunit, middle domain |Pseudomonas fragi [TaxId: 296]
d2afih_ : (THR56) (VAL126) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d3po4a2 : (PRO770) (ILE823) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Thermus aquaticus [TaxId: 271]
d1wdta5 : (ARG397) (VAL451) [view usage] : d.58.11.1 |Ferredoxin-like |EF-G C-terminal domain-like |EF-G/eEF-2 domains III and V |Elongation factor G (EF-G) |Thermus thermophilus, EF-G-2 [TaxId: 274]
d1j5ob_ : (TRP153) (ASP237) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d1q4ub_ : (THR29) (GLY93) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |4-hydroxybenzoyl CoA thioesterase |Arthrobacter sp., strain su [TaxId: 1667]
d3r3ab_ : (THR29) (GLY93) [view usage] : d.38.1.5 |Thioesterase/thiol ester dehydrase-isomerase |Thioesterase/thiol ester dehydrase-isomerase |PaaI/YdiI-like |automated matches |Arthrobacter sp. [TaxId: 1667]
d1o8uc_ : (PHE8) (GLY68) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |6-oxo camphor hydrolase |Rhodococcus erythropolis [TaxId: 1833]
d1szob_ : (PHE8) (GLY68) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |6-oxo camphor hydrolase |Rhodococcus erythropolis [TaxId: 1833]
d2k7ja_ : (PHE23) (LEU88) [view usage] : d.58.10.1 |Ferredoxin-like |Acylphosphatase/BLUF domain-like |Acylphosphatase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
d2av4a1 : (PHE87) (LYS152) [view usage] : c.47.1.8 |Thioredoxin fold |Thioredoxin-like |spliceosomal protein U5-15Kd |automated matches |Plasmodium yoelii [TaxId: 5861]
d2afie_ : (THR56) (VAL126) [view usage] : c.37.1.10 |P-loop containing nucleoside triphosphate hydrolases |P-loop containing nucleoside triphosphate hydrolases |Nitrogenase iron protein-like |Nitrogenase iron protein |Azotobacter vinelandii [TaxId: 354]
d2hh2a_ : (GLY26) (GLY85) [view usage] : d.51.1.0 |Eukaryotic type KH-domain (KH-domain type I) |Eukaryotic type KH-domain (KH-domain type I) |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1o8ua_ : (PHE8) (GLY68) [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |6-oxo camphor hydrolase |Rhodococcus erythropolis [TaxId: 1833]
d1qaja_ : (LEU207) (SER255) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |MMLV reverse transcriptase |Moloney murine leukemia virus, MoMLV [TaxId: 11801]
d3vaxa_ : (HIS262) (PHE332) [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Streptomyces lividans [TaxId: 1916]
d1huoa4 : (PRO151) (GLY231) [view usage] : d.218.1.2 |Nucleotidyltransferase |Nucleotidyltransferase |DNA polymerase beta-like |DNA polymerase beta, catalytic (31 kD) fragment |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2r3va2 : (HIS312) (GLU369) [view usage] : d.58.26.3 |Ferredoxin-like |GHMP Kinase, C-terminal domain |Mevalonate kinase |Mevalonate kinase |Human (Homo sapiens) [TaxId: 9606]
d1p4ka_ : (LYS30) (GLY106) [view usage] : d.153.1.5 |Ntn hydrolase-like |N-terminal nucleophile aminohydrolases (Ntn hydrolases) |(Glycosyl)asparaginase |Glycosylasparaginase (aspartylglucosaminidase, AGA) |Flavobacterium meningosepticum [TaxId: 238]
d1kqfb1 : (PRO106) (GLU153) [view usage] : d.58.1.5 |Ferredoxin-like |4Fe-4S ferredoxins |Ferredoxin domains from multidomain proteins |Formate dehydrogenase N, iron-sulfur (beta) subunit |Escherichia coli [TaxId: 562]
d3gona2 : (THR271) (ARG328) [view usage] : d.58.26.4 |Ferredoxin-like |GHMP Kinase, C-terminal domain |Phosphomevalonate kinase (PMK) |automated matches |Streptococcus pneumoniae [TaxId: 171101]
d2z51a2 : (ASN86) (ILE154) [view usage] : d.52.8.0 |Alpha-lytic protease prodomain-like |Fe-S cluster assembly (FSCA) domain-like |automated matches |automated matches |Arabidopsis thaliana
d2xcza_ : (ASP14) (ASP100) [view usage] : d.80.1.0 |Tautomerase/MIF |Tautomerase/MIF |automated matches |automated matches |Prochlorococcus marinus [TaxId: 74547]
d3cw2c3 : (ASN206) (VAL264) [view usage] : d.58.51.1 |Ferredoxin-like |eIF-2-alpha, C-terminal domain |eIF-2-alpha, C-terminal domain |eIF-2-alpha, C-terminal domain |Sulfolobus solfataricus [TaxId: 2287]
d1qe1b_ : (GLN161) (HIS235) [view usage] : e.8.1.2 |DNA/RNA polymerases |DNA/RNA polymerases |Reverse transcriptase |HIV-1 reverse transcriptase |Human immunodeficiency virus type 1 [TaxId: 11676]
d3mpob_ : (THR88) (GLU140) [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Lactobacillus brevis [TaxId: 387344]
d2jnva_ : (THR76) (THR148) [view usage] : d.52.8.0 |Alpha-lytic protease prodomain-like |Fe-S cluster assembly (FSCA) domain-like |automated matches |automated matches |Rice (Oryza sativa) [TaxId: 4530]
d1h70a_ : (PHE58) (PRO110) [view usage] : d.126.1.3 |Pentein, beta/alpha-propeller |Pentein |Dimethylarginine dimethylaminohydrolase DDAH |Dimethylarginine dimethylaminohydrolase DDAH |Pseudomonas aeruginosa [TaxId: 287]
d1qssa2 : (PHE769) (GLY824) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |DNA polymerase I (Klenow fragment) |Thermus aquaticus [TaxId: 271]
d1weya_ : (GLU28) (PHE80) [view usage] : d.58.7.1 |Ferredoxin-like |RNA-binding domain, RBD |Canonical RBD |Calcipressin-1 |Mouse (Mus musculus) [TaxId: 10090]
d1xbsa_ : (VAL68) (ILE134) [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
d1vgya2 : (ALA210) (SER291) [view usage] : d.58.19.1 |Ferredoxin-like |Bacterial exopeptidase dimerisation domain |Bacterial exopeptidase dimerisation domain |Succinyl-diaminopimelate desuccinylase |Neisseria meningitidis [TaxId: 487]
d4bwja2 : (PHE769) (ILE823) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |automated matches |Thermus aquaticus [TaxId: 271]
d3m8ra2 : (PHE769) (ILE823) [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |DNA polymerase I (Klenow fragment) |Thermus aquaticus [TaxId: 271]
d4kpka_ : (THR7) (ALA69) [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Shewanella pealeana [TaxId: 398579]
d1k47a2 : (THR271) (ARG328) [view usage] : d.58.26.4 |Ferredoxin-like |GHMP Kinase, C-terminal domain |Phosphomevalonate kinase (PMK) |Phosphomevalonate kinase (PMK) |Streptococcus pneumoniae r6 [TaxId: 171101]
d1fwka2 : (TYR242) (THR291) [view usage] : d.58.26.1 |Ferredoxin-like |GHMP Kinase, C-terminal domain |Homoserine kinase |Homoserine kinase |Methanococcus jannaschii [TaxId: 2190]
d2cfxa2 : (ASP77) (PHE134) [view usage] : d.58.4.2 |Ferredoxin-like |Dimeric alpha+beta barrel |Lrp/AsnC-like transcriptional regulator C-terminal domain |Transcriptional regulator LrpC |Bacillus subtilis [TaxId: 1423]
d3jqjb_ : (ASP51) (ARG141) [view usage] : d.58.21.0 |Ferredoxin-like |Molybdenum cofactor biosynthesis protein C, MoaC |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2idea_ : (ASP51) (ARG141) [view usage] : d.58.21.0 |Ferredoxin-like |Molybdenum cofactor biosynthesis protein C, MoaC |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
d2ahob3 : (ASN206) (VAL264) [view usage] : d.58.51.1 |Ferredoxin-like |eIF-2-alpha, C-terminal domain |eIF-2-alpha, C-terminal domain |eIF-2-alpha, C-terminal domain |Sulfolobus solfataricus [TaxId: 2287]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.8, c.67, c.2, d.58, c.108, c.14, c.37, c.47, d.153, d.126, d.38, d.218, d.52, d.51, d.80