Tableau information
Concept source: d3rdkb_ amino acid (a.a.) range (PRO241)(TRP305)
nSSEs in this Concept: 5
String of secondary struct.elems. (SSEs) defining this concept: HEEHE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(PRO241) (SER253) H1
(VAL256) (VAL260) E2
(SER261) (ALA267) E3
(PRO274) (HIS295) H4
(ARG301) (TRP305) E5
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 151.6° E2
E3 171.0° -35.9° E3
H4 -24.7° -161.2° 152.5° H4
E5 135.8° -35.1° -44.2° 159.2°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±11.6° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3aiua_ : (LYS385) (GLY456) [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Secale cereale [TaxId: 4550]
d4bmsk_ : (TYR71) (THR135) [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Ralstonia sp. [TaxId: 517192]
d3f6ma_ : (SER75) (THR136) [view usage] : d.79.5.1 |Bacillus chorismate mutase-like |IpsF-like |IpsF-like |automated matches |Yersinia pestis [TaxId: 214092]
d1gz0a1 : (LEU157) (GLY220) [view usage] : c.116.1.1 |alpha/beta knot |alpha/beta knot |SpoU-like RNA 2'-O ribose methyltransferase |RlmB, C-terminal domain |Escherichia coli [TaxId: 562]
d2esrb_ : (ALA100) (GLU147) [view usage] : c.66.1.46 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |YhhF-like |Putative methyltransferase SPy1538 |Streptococcus pyogenes [TaxId: 1314]
d3u7ba_ : (SER223) (TRP285) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Fungus (Fusarium oxysporum) [TaxId: 5507]
d3wq8a_ : (GLU351) (SER411) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d1uuqa_ : (TRP301) (TRP376) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Exomannosidase |Cellvibrio mixtus [TaxId: 39650]
d3op1b1 : (TYR114) (PRO153) [view usage] : c.26.1.0 |Adenine nucleotide alpha hydrolase-like |Nucleotidylyl transferase |automated matches |automated matches |Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
d1z8hd_ : (SER99) (PHE162) [view usage] : c.23.10.6 |Flavodoxin-like |SGNH hydrolase |Hypothetical protein alr1529 |Hypothetical protein alr1529 |Nostoc sp. PCC 7120 [TaxId: 103690]
d3o2la_ : (ALA221) (ALA267) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Thermoascus aurantiacus [TaxId: 5087]
d1knja_ : (GLN85) (THR134) [view usage] : d.79.5.1 |Bacillus chorismate mutase-like |IpsF-like |IpsF-like |2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF |Escherichia coli [TaxId: 562]
d3abza1 : (ARG76) (HIS147) [view usage] : c.1.8.7 |TIM beta/alpha-barrel |(Trans)glycosidases |NagZ-like |Beta-glucosidase |Kluyveromyces marxianus [TaxId: 4911]
d3w27a_ : (ILE230) (GLY293) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Thermoanaerobacterium saccharolyticum [TaxId: 1094508]
d1i1wa_ : (SER217) (TRP267) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Thermoascus aurantiacus [TaxId: 5087]
d2gftb_ : (THR240) (GLU321) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Bacillus licheniformis [TaxId: 1402]
d1k6aa_ : (ALA221) (TRP267) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Thermoascus aurantiacus [TaxId: 5087]
d1gted2 : (THR617) (SER670) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |Dihydropyrimidine dehydrogenase, domain 4 |Pig (Sus scrofa) [TaxId: 9823]
d1vjza_ : (ARG235) (ASN293) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Endoglucanase homologue TM1752 |Thermotoga maritima [TaxId: 2336]
d4hl7b2 : (PRO298) (GLY350) [view usage] : c.1.17.0 |TIM beta/alpha-barrel |Nicotinate/Quinolinate PRTase C-terminal domain-like |automated matches |automated matches |Vibrio cholerae [TaxId: 243277]
d3ro8a_ : (PRO241) (TRP305) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Paenibacillus sp. [TaxId: 324057]
d1z8ha_ : (SER99) (PHE162) [view usage] : c.23.10.6 |Flavodoxin-like |SGNH hydrolase |Hypothetical protein alr1529 |Hypothetical protein alr1529 |Nostoc sp. PCC 7120 [TaxId: 103690]
d3neaa_ : (SER72) (GLY136) [view usage] : c.56.3.0 |Phosphorylase/hydrolase-like |Peptidyl-tRNA hydrolase-like |automated matches |automated matches |Francisella tularensis [TaxId: 119856]
d3w25a_ : (ILE230) (GLY293) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Thermoanaerobacterium saccharolyticum [TaxId: 1094508]
d2ptha_ : (SER70) (GLY135) [view usage] : c.56.3.1 |Phosphorylase/hydrolase-like |Peptidyl-tRNA hydrolase-like |Peptidyl-tRNA hydrolase-like |Peptidyl-tRNA hydrolase |Escherichia coli [TaxId: 562]
d1knka_ : (SER73) (GLU135) [view usage] : d.79.5.1 |Bacillus chorismate mutase-like |IpsF-like |IpsF-like |2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF |Escherichia coli [TaxId: 562]
d2hnkc_ : (SER45) (ASP92) [view usage] : c.66.1.0 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |automated matches |automated matches |Leptospira interrogans [TaxId: 173]
d4lx4b_ : (TYR116) (GLY176) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Pseudomonas stutzeri [TaxId: 379731]
d3emca_ : (SER219) (PHE290) [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Bacillus sp. [TaxId: 89769]
d3pz9a_ : (GLN293) (ILE355) [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Thermotoga petrophila [TaxId: 390874]
d1z8hb_ : (SER99) (PHE162) [view usage] : c.23.10.6 |Flavodoxin-like |SGNH hydrolase |Hypothetical protein alr1529 |Hypothetical protein alr1529 |Nostoc sp. PCC 7120 [TaxId: 103690]
d3tq0a_ : (ASP143) (ILE194) [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |automated matches |Leishmania major [TaxId: 347515]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.1, c.2, c.26, c.56, c.66, c.23, c.116, d.79